Other packages > Find by keyword >

treestructure  

Detect Population Structure Within Phylogenetic Trees
View on CRAN: Click here


Download and install treestructure package within the R console
Install from CRAN:
install.packages("treestructure")

Install from Github:
library("remotes")
install_github("cran/treestructure")

Install by package version:
library("remotes")
install_version("treestructure", "0.1.0")



Attach the package and use:
library("treestructure")
Maintained by
Erik Volz
[Scholar Profile | Author Map]
First Published: 2020-02-17
Latest Update: 2020-02-17
Description:
Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns. The methods are described in Volz, E., Wiuf, C., Grad, Y., Frost, S., Dennis, A., & Didelot, X. (2020) <doi:10.1093/sysbio/syaa009>.
How to cite:
Erik Volz (2020). treestructure: Detect Population Structure Within Phylogenetic Trees. R package version 0.1.0, https://cran.r-project.org/web/packages/treestructure. Accessed 29 Apr. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited treestructure R package
View treestructure citation profile
Other R packages that treestructure depends, imports, suggests or enhances
Complete documentation for treestructure
Functions, R codes and Examples using the treestructure R package
Some associated functions: plot.TreeStructure . treestructure-package . trestruct . 
Some associated R codes: RcppExports.R . m13.R . treestructure.R .  Full treestructure package functions and examples
Downloads during the last 30 days
03/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/28Downloads for treestructure02468101214161820222426TrendBars

Today's Hot Picks in Authors and Packages

phecodemap  
Visualization for PheCode Mapping with ICD-9 and ICD-10-CM Codes
To build a shiny app for visualization of the hierarchy of PheCode Mapping with International Classi ...
Download / Learn more Package Citations See dependency  
bigGP  
Distributed Gaussian Process Calculations
Distributes Gaussian process calculations across nodes in a distributed memory setting, using Rmpi. ...
Download / Learn more Package Citations See dependency  
knockoff  
The Knockoff Filter for Controlled Variable Selection
The knockoff filter is a general procedure for controlling the false discovery rate (FDR) when perf ...
Download / Learn more Package Citations See dependency  
NBBDesigns  
Neighbour Balanced Block Designs (NBBDesigns)
Neighbour-balanced designs ensure that no treatment is disadvantaged unfairly by its surroundings. T ...
Download / Learn more Package Citations See dependency  
PCAmatchR  
Match Cases to Controls Based on Genotype Principal Components
Matches cases to controls based on genotype principal components (PC). In order to produce better r ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

24,142

R Packages

207,311

Dependencies

65,176

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA