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treestructure  

Detect Population Structure Within Phylogenetic Trees
View on CRAN: Click here


Download and install treestructure package within the R console
Install from CRAN:
install.packages("treestructure")

Install from Github:
library("remotes")
install_github("cran/treestructure")

Install by package version:
library("remotes")
install_version("treestructure", "0.1.0")



Attach the package and use:
library("treestructure")
Maintained by
Erik Volz
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-02-17
Latest Update: 2020-02-17
Description:
Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns. The methods are described in Volz, E., Wiuf, C., Grad, Y., Frost, S., Dennis, A., & Didelot, X. (2020) <doi:10.1093/sysbio/syaa009>.
How to cite:
Erik Volz (2020). treestructure: Detect Population Structure Within Phylogenetic Trees. R package version 0.1.0, https://cran.r-project.org/web/packages/treestructure. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Complete documentation for treestructure
Functions, R codes and Examples using the treestructure R package
Some associated functions: plot.TreeStructure . treestructure-package . trestruct . 
Some associated R codes: RcppExports.R . m13.R . treestructure.R .  Full treestructure package functions and examples
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