Other packages > Find by keyword >

treenomial  

Comparison of Trees using a Tree Defining Polynomial
View on CRAN: Click here


Download and install treenomial package within the R console
Install from CRAN:
install.packages("treenomial")

Install from Github:
library("remotes")
install_github("cran/treenomial")

Install by package version:
library("remotes")
install_version("treenomial", "1.1.4")



Attach the package and use:
library("treenomial")
Maintained by
Matthew Gould
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-11-28
Latest Update: 2022-06-06
Description:
Provides functionality for creation and comparison of polynomials that uniquely describe trees as introduced in Liu (2019, <doi:10.48550/arXiv.1904.03332>). The core method converts rooted unlabeled phylo objects from 'ape' to the tree defining polynomials described with coefficient matrices. Additionally, a conversion for rooted binary trees with binary trait labels is also provided. Once the polynomials of trees are calculated there are functions to calculate distances, distance matrices and plot different distance trees from a target tree. Manipulation and conversion to the tree defining polynomials is implemented in C++ with 'Rcpp' and 'RcppArmadillo'. Furthermore, parallel programming with 'RcppThread' is used to improve performance converting to polynomials and calculating distances.
How to cite:
Matthew Gould (2019). treenomial: Comparison of Trees using a Tree Defining Polynomial. R package version 1.1.4, https://cran.r-project.org/web/packages/treenomial. Accessed 26 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:15), 1.0.0 (2019-11-28 16:10), 1.0.1 (2019-12-06 10:00), 1.1.1 (2019-12-07 00:40), 1.1.2 (2020-02-13 07:20), 1.1.3 (2020-10-05 17:00), 1.1.4 (2022-06-06 19:50)
Other packages that cited treenomial R package
View treenomial citation profile
Other R packages that treenomial depends, imports, suggests or enhances
Complete documentation for treenomial
Functions, R codes and Examples using the treenomial R package
Some associated functions: alignPoly . allTrees . plotExtremeTrees . polyDist . polyToDistMat . treeDist . treeJuliaSet . treeToDistMat . treeToPoly . wedge . 
Some associated R codes: RcppExports.R . allTrees.R . distFunctions.R . treeJuliaSet.R . treeToPoly.R . wedge.R .  Full treenomial package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  
PCADSC  
Tools for Principal Component Analysis-Based Data Structure Comparisons
A suite of non-parametric, visual tools for assessing differences in data structures for two datase ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  
leafgl  
High-Performance 'WebGl' Rendering for Package 'leaflet'
Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript l ...
Download / Learn more Package Citations See dependency  
clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA