R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
treeducken
View on CRAN: Click
here
Download and install treeducken package within the R console
Install from CRAN:
install.packages("treeducken")
Install from Github:
library("remotes")
install_github("cran/treeducken")
Install by package version:
library("remotes")
install_version("treeducken", "1.1.0")
Attach the package and use:
library("treeducken")
Maintained by
Wade Dismukes
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-06
Latest Update: 2023-09-28
Description:
Simulates nested phylogenetic trees (gene trees in species tree,
symbiont trees in host trees) using birth-death processes and transfers
between lineages. Simulations of gene trees within species trees are performed
using a three-tree model with species trees, locus trees, and gene trees.
The cophylogenetic birth-death process is used to simulate sets of host and
symbiont trees with extant associations between tips.
For more information about the three-tree model see:
Mallo et al. (2015) ,
Rasmussen and Kellis (2012) .
How to cite:
Wade Dismukes (2020). treeducken: Nested Phylogenetic Tree Simulator. R package version 1.1.0, https://cran.r-project.org/web/packages/treeducken. Accessed 21 Dec. 2024.
Other packages that cited treeducken R package
View treeducken citation profile
Other R packages that treeducken depends,
imports, suggests or enhances
Functions, R codes and Examples using
the treeducken R package
Some associated functions: add_events . add_scalebar . build_historical_association_matrix . c.cophy . calculate_expected_leaves_locustree . calculate_expected_leaves_sptree . collapse_locus_subtree . convert_assoc_table_to_matrix . convert_to_cophy . cophy_summary_stat . count_cherries . draw_cophy . draw_curve . drop_extinct . estimate_node_heights . genetree_summary_stat . get_ana_events . get_loci . get_tip_labels_tree_list . is.cophy . is_extinct . make_textbox . parafit_stat . plot.cophy . print.cophy . retrieve_parent_genetrees . sim_cophyBD . sim_cophyBD_ana . sim_ltBD . sim_msc . sim_multilocus_coal . sim_stBD . sim_stBD_t . str.multiCophy . summary.cophy . treeducken-package .
Some associated R codes: RcppExports.R . build_historical_assoc_mat.R . calculate_cophylo_summary_stat.R . calculate_genetree_summary_stat.R . convert_assoc_tab_to_mat.R . convert_to_cophylo.R . deprecated_sim_functions.R . estimate_node_heights.R . is.cophylo.R . plot_cophy.R . sim_multilocus.R . summary_cophylo.R . utilities.R . Full treeducken package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
SEIRfansy
Extended Susceptible-Exposed-Infected-Recovery Model for
handling high false negative rate and symp ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Michael Kleinsasser (view profile)
batteryreduction
Battery reduction is a method used in data reduction. It uses Gram-Schmidt orthogonal rotations to f ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Chunqiao Luo (view profile)
condGEE
Solves for the mean parameters, the variance parameter, and their asymptotic variance in a condition ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: David Clement (view profile)
CIFsmry
Estimate of cumulative incidence function in two samples. Provide weighted summary statistics based ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jianing Li (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
helda
The main focus is on preprocessing and data visualization of machine learning models performances.So ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Simon Corde (view profile)