Other packages > Find by keyword >

treeducken  

Nested Phylogenetic Tree Simulator
View on CRAN: Click here


Download and install treeducken package within the R console
Install from CRAN:
install.packages("treeducken")

Install from Github:
library("remotes")
install_github("cran/treeducken")

Install by package version:
library("remotes")
install_version("treeducken", "1.1.0")



Attach the package and use:
library("treeducken")
Maintained by
Wade Dismukes
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-06
Latest Update:
Description:
Simulates nested phylogenetic trees (gene trees in species tree, symbiont trees in host trees) using birth-death processes and transfers between lineages. Simulations of gene trees within species trees are performed using a three-tree model with species trees, locus trees, and gene trees. The cophylogenetic birth-death process is used to simulate sets of host and symbiont trees with extant associations between tips. For more information about the three-tree model see: Mallo et al. (2015) , Rasmussen and Kellis (2012) .
How to cite:
Wade Dismukes (2020). treeducken: Nested Phylogenetic Tree Simulator. R package version 1.1.0, https://cran.r-project.org/web/packages/treeducken. Accessed 22 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:15), 1.0.0 (2020-10-06 10:10), 1.1.0 (2021-03-02 06:20)
Other packages that cited treeducken R package
View treeducken citation profile
Other R packages that treeducken depends, imports, suggests or enhances
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
loon  
Interactive Statistical Data Visualization
An extendable toolkit for interactive data visualization and exploration. ...
Download / Learn more Package Citations See dependency  
CTM  
A Text Mining Toolkit for Chinese Document
The CTM package is designed to solve problems of text mining and is specific for Chinese document. ...
Download / Learn more Package Citations See dependency  
bayesmeta  
Bayesian Random-Effects Meta-Analysis and Meta-Regression
A collection of functions allowing to derive the posterior distribution of the model parameters in r ...
Download / Learn more Package Citations See dependency  
ISOweek  
Week of the year and weekday according to ISO 8601
This is an substitute for the %V and %u formats which are not implemented on Windows. In addition, ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA