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treeducken  

Nested Phylogenetic Tree Simulator
View on CRAN: Click here


Download and install treeducken package within the R console
Install from CRAN:
install.packages("treeducken")

Install from Github:
library("remotes")
install_github("cran/treeducken")

Install by package version:
library("remotes")
install_version("treeducken", "1.1.0")



Attach the package and use:
library("treeducken")
Maintained by
Wade Dismukes
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-06
Latest Update:
Description:
Simulates nested phylogenetic trees (gene trees in species tree, symbiont trees in host trees) using birth-death processes and transfers between lineages. Simulations of gene trees within species trees are performed using a three-tree model with species trees, locus trees, and gene trees. The cophylogenetic birth-death process is used to simulate sets of host and symbiont trees with extant associations between tips. For more information about the three-tree model see: Mallo et al. (2015) , Rasmussen and Kellis (2012) .
How to cite:
Wade Dismukes (2020). treeducken: Nested Phylogenetic Tree Simulator. R package version 1.1.0, https://cran.r-project.org/web/packages/treeducken. Accessed 05 Jun. 2026.
Previous versions and publish date:
1.0.0 (2020-10-06 10:10), 1.1.0 (2021-03-02 06:20)
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