R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
treebalance
View on CRAN: Click
here
Download and install treebalance package within the R console
Install from CRAN:
install.packages("treebalance")
Install from Github:
library("remotes")
install_github("cran/treebalance")
Install by package version:
library("remotes")
install_version("treebalance", "1.2.0")
Attach the package and use:
library("treebalance")
Maintained by
Luise Kuehn
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-09-22
Latest Update: 2023-12-14
Description:
The aim of the 'R' package 'treebalance' is to provide functions for the computation of a large variety of (im)balance indices for rooted trees. The package accompanies the book ”Tree balance indices: a comprehensive survey” by M. Fischer, L. Herbst, S. Kersting, L. Kuehn and K. Wicke (2023) <ISBN: 978-3-031-39799-8>, <doi:10.1007/978-3-031-39800-1>, which gives a precise definition for the terms 'balance index' and 'imbalance index' (Chapter 4) and provides an overview of the terminology in this manual (Chapter 2). For further information on (im)balance indices, see also Fischer et al. (2021) <https://treebalance.wordpress.com>. Considering both established and new (im)balance indices, 'treebalance' provides (among others) functions for calculating the following 18 established indices and index families: the average leaf depth, the B1 and B2 index, the Colijn-Plazzotta rank, the normal, corrected, quadratic and equal weights Colless index, the family of Colless-like indices, the family of I-based indices, the Rogers J index, the Furnas rank, the rooted quartet index, the s-shape statistic, the Sackin index, the symmetry nodes index, the total cophenetic index and the variance of leaf depths. Additionally, we include 9 tree shape statistics that satisfy the definition of an (im)balance index but have not been thoroughly analyzed in terms of tree balance in the literature yet. These are: the total internal path length, the total path length, the average vertex depth, the maximum width, the modified maximum difference in widths, the maximum depth, the maximum width over maximum depth, the stairs1 and the stairs2 index. As input, most functions of 'treebalance' require a rooted (phylogenetic) tree in 'phylo' format (as introduced in 'ape' 1.9 in November 2006). 'phylo' is used to store (phylogenetic) trees with no vertices of out-degree one. For further information on the format we kindly refer the reader to E. Paradis (2012) <http://ape-package.ird.fr/misc/FormatTreeR_24Oct2012.pdf>.
How to cite:
Luise Kuehn (2021). treebalance: Computation of Tree (Im)Balance Indices. R package version 1.2.0, https://cran.r-project.org/web/packages/treebalance. Accessed 22 Dec. 2024.
Other packages that cited treebalance R package
View treebalance citation profile
Other R packages that treebalance depends,
imports, suggests or enhances
Complete documentation for treebalance
Functions, R codes and Examples using
the treebalance R package
Some associated functions: B1I . B2I . IbasedI . areaPerPairI . auxFuncs . avgLeafDepI . avgVertDep . cherryI . colPlaLab . colPlaLab_inv . collessI . collesslikeI . ewCollessI . furnasI . furnasI_inv . mCherryI . mWovermD . maxDelW . maxDepth . maxWidth . rQuartetI . rogersI . sShapeI . sackinI . stairs1 . stairs2 . symNodesI . totCophI . totIntPathLen . totPathLen . varLeafDepI . wedEth . weighL1dist .
Some associated R codes: B1I.R . B2I.R . IbasedI.R . areaPerPairI.R . auxFuncs.R . avgLeafDepI.R . avgVertDep.R . cherryI.R . colPlaLab.R . colPlaLab_inv.R . collessI.R . collesslikeI.R . ewCollessI.R . furnasI.R . furnasI_inv.R . mCherryI.R . mWovermD.R . maxDelW.R . maxDepth.R . maxWidth.R . rQuartetI.R . rogersI.R . sShapeI.R . sackinI.R . stairs1.R . stairs2.R . symNodesI.R . totCophI.R . totIntPathLen.R . totPathLen.R . varLeafDepI.R . wedEth-data.R . weighL1dist.R . Full treebalance package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
tropAlgebra
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Muhammad Kashif Hanif (view profile)
wordspace
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Stephanie Evert (view profile)
composits
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Sevvandi Kandanaarachchi (view profile)
elect
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Ardo van den Hout (view profile)
Rfast2
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Manos Papadakis (view profile)