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transitiontrees  

Transition Trajectories and Dynamics of Variable-Length Pathways or Sequences
View on CRAN: Click here


Download and install transitiontrees package within the R console
Install from CRAN:
install.packages("transitiontrees")

Install from Github:
library("remotes")
install_github("cran/transitiontrees")

Install by package version:
library("remotes")
install_version("transitiontrees", "0.1.2")



Attach the package and use:
library("transitiontrees")
Maintained by
Mohammed Saqr
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-18
Latest Update: 2026-06-18
Description:
Analyzes transition trajectories in event, sequence, and ordered data, focusing on how states follow one another, how far processes unfold, and where pathways branch or converge. Trajectories are modeled using variable-order prediction suffix trees (Ron, Singer, & Tishby, 1996) <doi:10.1023/A:1026490906255>, implemented in both frequency-based and prediction-based forms. The framework includes multiple pruning, validation, and smoothing techniques to ensure model robustness. Visualization options include transition trees, radial sunburst diagrams, transition heatmaps, and forward trajectory trees.
How to cite:
Mohammed Saqr (2026). transitiontrees: Transition Trajectories and Dynamics of Variable-Length Pathways or Sequences. R package version 0.1.2, https://cran.r-project.org/web/packages/transitiontrees. Accessed 24 Oct. 2026.
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