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tracerer  

Tracer from R
View on CRAN: Click here


Download and install tracerer package within the R console
Install from CRAN:
install.packages("tracerer")

Install from Github:
library("remotes")
install_github("cran/tracerer")

Install by package version:
library("remotes")
install_version("tracerer", "2.2.3")



Attach the package and use:
library("tracerer")
Maintained by
Richèl J.C. Bilderbeek
[Scholar Profile | Author Map]
First Published: 2018-10-30
Latest Update: 2021-05-30
Description:
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'Tracer' (<https://github.com/beast-dev/tracer/>) is a GUI tool to parse and analyze the files generated by 'BEAST2'. This package provides a way to parse and analyze 'BEAST2' input files without active user input, but using R function calls instead.
How to cite:
Richèl J.C. Bilderbeek (2018). tracerer: Tracer from R. R package version 2.2.3, https://cran.r-project.org/web/packages/tracerer. Accessed 05 May. 2025.
Previous versions and publish date:
1.5.1 (2018-10-30 17:30), 2.0.1 (2019-03-01 15:10), 2.0.2 (2019-12-02 13:10), 2.1 (2020-05-06 14:40), 2.2.2 (2021-05-30 11:40)
Other packages that cited tracerer R package
View tracerer citation profile
Other R packages that tracerer depends, imports, suggests or enhances
Complete documentation for tracerer
Functions, R codes and Examples using the tracerer R package
Some associated functions: calc_act . calc_act_cpp . calc_act_r . calc_ess . calc_esses . calc_geom_mean . calc_hpd_interval . calc_mode . calc_std_error_of_mean_cpp . calc_stderr_mean . calc_summary_stats . calc_summary_stats_trace . calc_summary_stats_traces . check_trace . count_trees_in_file . cs_std_dev . default_params_doc . extract_operators_lines . get_tracerer_path . get_tracerer_paths . get_tracerer_tempfilename . is_posterior . is_trees_file . is_trees_posterior . parse_beast_log . parse_beast_output_files . parse_beast_posterior . parse_beast_state_operators . parse_beast_tracelog_file . parse_beast_trees . remove_burn_in . remove_burn_ins . save_beast_estimates . save_beast_trees . tracerer-package . 
Some associated R codes: RcppExports.R . calc_act.R . calc_ess.R . calc_esses.R . calc_geom_mean.R . calc_hpd_interval.R . calc_mode.R . calc_stderr_mean.R . calc_summary_stats.R . check_trace.R . count_trees_in_file.R . cs_std_dev.R . default_params_doc.R . extract_operators_lines.R . get_path.R . get_paths.R . get_tracerer_tempfilename.R . is_posterior.R . is_trees_file.R . is_trees_posterior.R . parse_beast_log.R . parse_beast_output_files.R . parse_beast_posterior.R . parse_beast_state.R . parse_beast_tracelog_file.R . parse_beast_trees.R . remove_burn_in.R . remove_burn_ins.R . save_beast_estimates.R . save_beast_trees.R . tracerer-package.R .  Full tracerer package functions and examples
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