Other packages > Find by keyword >

tracerer  

Tracer from R
View on CRAN: Click here


Download and install tracerer package within the R console
Install from CRAN:
install.packages("tracerer")

Install from Github:
library("remotes")
install_github("cran/tracerer")

Install by package version:
library("remotes")
install_version("tracerer", "2.2.4")



Attach the package and use:
library("tracerer")
Maintained by
Richèl J.C. Bilderbeek
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-10-30
Latest Update: 2023-09-27
Description:
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'Tracer' (<https://github.com/beast-dev/tracer/>) is a GUI tool to parse and analyze the files generated by 'BEAST2'. This package provides a way to parse and analyze 'BEAST2' input files without active user input, but using R function calls instead.
How to cite:
Richèl J.C. Bilderbeek (2018). tracerer: Tracer from R. R package version 2.2.4, https://cran.r-project.org/web/packages/tracerer. Accessed 31 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:14), 1.5.1 (2018-10-30 17:30), 2.0.1 (2019-03-01 15:10), 2.0.2 (2019-12-02 13:10), 2.1 (2020-05-06 14:40), 2.2.2 (2021-05-30 11:40), 2.2.3 (2023-09-27 13:30)
Other packages that cited tracerer R package
View tracerer citation profile
Other R packages that tracerer depends, imports, suggests or enhances
Complete documentation for tracerer
Functions, R codes and Examples using the tracerer R package
Some associated functions: calc_act . calc_act_cpp . calc_act_r . calc_ess . calc_esses . calc_geom_mean . calc_hpd_interval . calc_mode . calc_std_error_of_mean_cpp . calc_stderr_mean . calc_summary_stats . calc_summary_stats_trace . calc_summary_stats_traces . check_trace . count_trees_in_file . cs_std_dev . default_params_doc . extract_operators_lines . get_tracerer_path . get_tracerer_paths . get_tracerer_tempfilename . is_posterior . is_trees_file . is_trees_posterior . parse_beast_log . parse_beast_output_files . parse_beast_posterior . parse_beast_state_operators . parse_beast_tracelog_file . parse_beast_trees . remove_burn_in . remove_burn_ins . save_beast_estimates . save_beast_trees . tracerer-package . 
Some associated R codes: RcppExports.R . calc_act.R . calc_ess.R . calc_esses.R . calc_geom_mean.R . calc_hpd_interval.R . calc_mode.R . calc_stderr_mean.R . calc_summary_stats.R . check_trace.R . count_trees_in_file.R . cs_std_dev.R . default_params_doc.R . extract_operators_lines.R . get_path.R . get_paths.R . get_tracerer_tempfilename.R . is_posterior.R . is_trees_file.R . is_trees_posterior.R . parse_beast_log.R . parse_beast_output_files.R . parse_beast_posterior.R . parse_beast_state.R . parse_beast_tracelog_file.R . parse_beast_trees.R . remove_burn_in.R . remove_burn_ins.R . save_beast_estimates.R . save_beast_trees.R . tracerer-package.R .  Full tracerer package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
getspres  
SPRE Statistics for Exploring Heterogeneity in Meta-Analysis
An implementation of SPRE (standardised predicted random-effects) statistics in R to explore hetero ...
Download / Learn more Package Citations See dependency  
interpretCI  
Estimate the Confidence Interval and Interpret Step by Step
Estimate confidence intervals for mean, proportion, mean difference for unpaired and paired samples ...
Download / Learn more Package Citations See dependency  

29,315

R Packages

247,686

Dependencies

77,531

Author Associations

29,316

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA