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trace  

Tandem Repeat Analysis by Capillary Electrophoresis
View on CRAN: Click here


Download and install trace package within the R console
Install from CRAN:
install.packages("trace")

Install from Github:
library("remotes")
install_github("cran/trace")

Install by package version:
library("remotes")
install_version("trace", "0.5.0")



Attach the package and use:
library("trace")
Maintained by
Zachariah McLean
[Scholar Profile | Author Map]
First Published: 2025-01-16
Latest Update: 2025-01-16
Description:
A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) <doi:10.1186/1752-0509-4-29>).
How to cite:
Zachariah McLean (2025). trace: Tandem Repeat Analysis by Capillary Electrophoresis. R package version 0.5.0, https://cran.r-project.org/web/packages/trace. Accessed 17 Feb. 2025.
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