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topr
View on CRAN: Click
here
Download and install topr package within the R console
Install from CRAN:
install.packages("topr")
Install from Github:
library("remotes")
install_github("cran/topr")
Install by package version:
library("remotes")
install_version("topr", "2.0.2")
Attach the package and use:
library("topr")
Maintained by
Thorhildur Juliusdottir
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-01-12
Latest Update: 2024-02-04
Description:
A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
How to cite:
Thorhildur Juliusdottir (2022). topr: Create Custom Plots for Viewing Genetic Association Results. R package version 2.0.2, https://cran.r-project.org/web/packages/topr. Accessed 05 Jan. 2025.
Previous versions and publish date:
1.0.0 (2022-01-12 12:00), 1.1.0 (2022-10-25 13:50), 1.1.1 (2022-11-04 14:10), 1.1.2 (2023-01-13 17:20), 1.1.3 (2023-02-12 22:30), 1.1.4 (2023-03-09 14:50), 1.1.5 (2023-04-25 19:10), 1.1.6 (2023-04-26 13:40), 1.1.7 (2023-05-23 13:00), 1.1.8 (2023-08-26 21:40), 1.1.9 (2023-09-06 17:50), 1.1.10 (2023-09-13 16:00), 2.0.0 (2024-02-04 13:00), 2.0.1 (2024-03-15 17:30)
Other packages that cited topr R package
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Other R packages that topr depends,
imports, suggests or enhances
Complete documentation for topr
Functions, R codes and Examples using
the topr R package
Some associated functions: CD_FINNGEN . CD_UKBB . R2_CD_UKBB . UC_UKBB . annotate_with_nearest_gene . create_snpset . create_snpset_code . effect_plot . effectplot . flip_to_positive_allele_for_dat1 . get_best_snp_per_MB . get_gene . get_gene_coords . get_genes_by_Gene_Symbol . get_genes_in_region . get_lead_snps . get_overlapping_snps_by_pos . get_snps_within_region . get_snpset . get_snpset_code . get_top_snp . get_topr_colors . locuszoom . manhattan . match_alleles . match_by_alleles . match_by_pos . pipe . qqtopr . regionplot . topr .
Some associated R codes: dat_checks.R . data.R . deprec_funcs.R . effectplot.R . exonplot.R . geneplot.R . get_genes_and_annotation.R . get_plots.R . globals.R . locuszoomplot.R . manhattan.R . miscellaneous.R . plot_functions.R . qqtopr.R . regionplot.R . setters_and_getters.R . topr.R . utils-pipe.R . Full topr package functions and examples
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