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tmbstan  

MCMC Sampling from 'TMB' Model Object using 'Stan'
View on CRAN: Click here


Download and install tmbstan package within the R console
Install from CRAN:
install.packages("tmbstan")

Install from Github:
library("remotes")
install_github("cran/tmbstan")

Install by package version:
library("remotes")
install_version("tmbstan", "1.0.91")



Attach the package and use:
library("tmbstan")
Maintained by
Kasper Kristensen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-12-19
Latest Update: 2023-08-26
Description:
Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <doi:10.1371/journal.pone.0197954>.
How to cite:
Kasper Kristensen (2017). tmbstan: MCMC Sampling from 'TMB' Model Object using 'Stan'. R package version 1.0.91, https://cran.r-project.org/web/packages/tmbstan
Previous versions and publish date:
1.0.0 (2017-12-19 17:40), 1.0.1 (2018-11-09 08:20), 1.0.2 (2019-05-18 12:30), 1.0.3 (2021-12-14 23:20), 1.0.4 (2022-03-21 08:40), 1.0.7 (2023-03-24 13:50), 1.0.9 (2023-03-29 19:10)
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Functions, R codes and Examples using the tmbstan R package
Some associated functions: tmbstan . 
Some associated R codes: tmbstan.R . zzz.R .  Full tmbstan package functions and examples
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