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timeSeq  

Detecting Differentially Expressed Genes in Time Course RNA-Seq Data
View on CRAN: Click here


Download and install timeSeq package within the R console
Install from CRAN:
install.packages("timeSeq")

Install from Github:
library("remotes")
install_github("cran/timeSeq")

Install by package version:
library("remotes")
install_version("timeSeq", "1.0.4")



Attach the package and use:
library("timeSeq")
Maintained by
Fan Gao
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-04-19
Latest Update: 2019-02-09
Description:
A negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.
How to cite:
Fan Gao (2015). timeSeq: Detecting Differentially Expressed Genes in Time Course RNA-Seq Data. R package version 1.0.4, https://cran.r-project.org/web/packages/timeSeq. Accessed 05 Jan. 2025.
Previous versions and publish date:
1.0.0 (2015-04-19 07:55), 1.0.1 (2015-09-25 23:15), 1.0.2 (2016-10-28 00:05), 1.0.3 (2017-07-17 23:33), 1.0.4 (2019-02-09 06:50)
Other packages that cited timeSeq R package
View timeSeq citation profile
Other R packages that timeSeq depends, imports, suggests or enhances
Functions, R codes and Examples using the timeSeq R package
Some associated functions: pAbp . simulate.dt . timeSeq.heatmap . timeSeq . timeSeq.screeplot . timeSeq.sort . timeSeq_1.0.4-package . 
Some associated R codes: timeSeq.R . timeSeq.heatmap.R . timeSeq.screeplot.R . timeSeq.sort.R .  Full timeSeq package functions and examples
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