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tidyestimate  

A Tidy Implementation of 'ESTIMATE'
View on CRAN: Click here


Download and install tidyestimate package within the R console
Install from CRAN:
install.packages("tidyestimate")

Install from Github:
library("remotes")
install_github("cran/tidyestimate")

Install by package version:
library("remotes")
install_version("tidyestimate", "1.1.1")



Attach the package and use:
library("tidyestimate")
Maintained by
Kai Aragaki
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-21
Latest Update: 2023-08-21
Description:
The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.
How to cite:
Kai Aragaki (2021). tidyestimate: A Tidy Implementation of 'ESTIMATE'. R package version 1.1.1, https://cran.r-project.org/web/packages/tidyestimate. Accessed 05 Jan. 2025.
Previous versions and publish date:
1.0.4 (2021-06-21 08:20), 1.1.0 (2021-09-09 21:40)
Other packages that cited tidyestimate R package
View tidyestimate citation profile
Other R packages that tidyestimate depends, imports, suggests or enhances
Complete documentation for tidyestimate
Functions, R codes and Examples using the tidyestimate R package
Some associated functions: common_genes . estimate_score . filter_common_genes . gene_sets . ov . plot_purity . purity_data_affy . tidyestimate . 
Some associated R codes: data.R . estimate_score.R . filter_common_genes.R . plot_purity.R . tidyestimate-package.R . tidyestimate.R .  Full tidyestimate package functions and examples
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