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tidyGenR  

Tidy Multilocus Amplicon Genotypes
View on CRAN: Click here


Download and install tidyGenR package within the R console
Install from CRAN:
install.packages("tidyGenR")

Install from Github:
library("remotes")
install_github("cran/tidyGenR")

Install by package version:
library("remotes")
install_version("tidyGenR", "0.1.7")



Attach the package and use:
library("tidyGenR")
Maintained by
Miguel Camacho
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-02-17
Latest Update: 2026-02-17
Description:
Variant determination and genotyping from high throughput sequences from multilocus amplicon libraries, typically sequenced in Illumina MiSeq or similar. It provides a set of core functions for the central steps: demultiplex by locus, truncate reads, variant calling, and genotype calling. Additionally, it provides a set of functions for diagnosis and estimation of best running parameters and multiple extensions for genotype/variants manipulation and reformatting. Output variants and genotypes are output in 'tidy' format, thus facilitating reformatting, manipulation and potential connection to other R packages.
How to cite:
Miguel Camacho (2026). tidyGenR: Tidy Multilocus Amplicon Genotypes. R package version 0.1.7, https://cran.r-project.org/web/packages/tidyGenR. Accessed 06 Aug. 2026.
Previous versions and publish date:
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Complete documentation for tidyGenR
Functions, R codes and Examples using the tidyGenR R package
Full tidyGenR package functions and examples
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