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threeBrain  

3D Brain Visualization
View on CRAN: Click here


Download and install threeBrain package within the R console
Install from CRAN:
install.packages("threeBrain")

Install from Github:
library("remotes")
install_github("cran/threeBrain")

Install by package version:
library("remotes")
install_version("threeBrain", "1.0.1")



Attach the package and use:
library("threeBrain")
Maintained by
Zhengjia Wang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-06-28
Latest Update: 2024-02-18
Description:
A fast, interactive cross-platform, and easy to share 'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or 'AFNI/SUMA' surfaces. The viewer widget can be either standalone or embedded into 'R-shiny' applications. The standalone version only require a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox', 'Safari'), and can be inserted into any websites. The 'R-shiny' support allows the 3D viewer to be dynamically generated from reactive user inputs. This feature has been fully adopted by 'RAVE' , an interactive toolbox to analyze 'iEEG' data. Documentation about 'threeBrain' is provided by and several vignettes included in this package. To cite the package, please check our 'NeuroImage' paper by Magnotti, Wang, and Beauchamp (2020, ), or see 'citation("threeBrain")' for details.
How to cite:
Zhengjia Wang (2019). threeBrain: 3D Brain Visualization. R package version 1.0.1, https://cran.r-project.org/web/packages/threeBrain
Previous versions and publish date:
0.1.2 (2019-06-28 18:40), 0.1.3 (2019-09-10 18:40), 0.1.4 (2019-10-18 23:30), 0.1.5 (2020-01-20 21:50), 0.1.7 (2020-05-12 13:00), 0.1.8 (2020-06-23 07:50), 0.1.9 (2021-01-10 06:20), 0.2.0 (2021-07-27 15:20), 0.2.1 (2021-08-03 14:00), 0.2.3 (2021-10-13 17:10), 0.2.4 (2021-12-03 15:40), 0.2.5 (2022-05-30 09:00), 0.2.6 (2022-08-25 10:30), 0.2.7 (2022-10-16 02:20), 0.2.9 (2023-03-14 21:30), 1.0.0 (2023-06-04 01:30), 1.0.1 (2023-07-03 23:30)
Other packages that cited threeBrain R package
View threeBrain citation profile
Other R packages that threeBrain depends, imports, suggests or enhances
Functions, R codes and Examples using the threeBrain R package
Some associated functions: AbstractGeom . BlankGeom . DataCubeGeom . DataCubeGeom2 . FreeGeom . GeomGroup . LineSegmentsGeom . SphereGeom . TubeGeom . brain_proxy . brain_setup . check_freesurfer_path . create_group . default_template_directory . freesurfer_brain . freesurfer_lut . generate_smooth_envelope . geom_freemesh . geom_sphere . get_digest_header . import-fs-suma . import_from_freesurfer . localization_module . merge_brain . read_fs_asc . read_fs_labels . read_fs_m3z . read_fs_mgh_mgz . read_gii2 . read_mgz . reexports . renderBrain . reorient_volume . save_brain . template_subject . threeBrain . threejsBrainOutput . threejs_brain . video_content . voxel_colormap . voxel_cube . 
Some associated R codes: aaa.R . cache_afni_suma.R . cache_fs.R . cache_subject.R . class_animations.R . class_brain.R . class_brainatlas.R . class_brainelectrodes.R . class_brainsurface.R . class_brainvolume.R . class_multibrain.R . class_proxy.R . ext_media.R . fs_brain.R . fs_brain2.R . fs_import-atlas.R . fs_import-curv.R . fs_import-surface.R . fs_import-t1.R . fs_import-xform.R . fs_import.R . fs_lut.R . func_scatter.R . geom_abstract.R . geom_blank.R . geom_datacube.R . geom_datacube2.R . geom_electrode.R . geom_free.R . geom_linesegments.R . geom_linked.R . geom_plane.R . geom_sphere.R . geom_tube.R . loaders.R . print.R . s3_geom.R . shiny-localization.R . simple_server.R . suma_import-atlas.R . suma_import-curv.R . suma_import-surface.R . suma_import-t1.R . suma_import-xform.R . threeBrain.R . threejs_brain.R . utils.R . utils_orient.R . utils_outer_smooth.R . utils_palette_voxel.R . zzz.R .  Full threeBrain package functions and examples
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