Other packages > Find by keyword >

tempoR  

Characterizing Temporal Dysregulation
View on CRAN: Click here


Download and install tempoR package within the R console
Install from CRAN:
install.packages("tempoR")

Install from Github:
library("remotes")
install_github("cran/tempoR")

Install by package version:
library("remotes")
install_version("tempoR", "1.0.4.4")



Attach the package and use:
library("tempoR")
Maintained by
Christopher Pietras
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-05-27
Latest Update:
Description:
TEMPO (TEmporal Modeling of Pathway Outliers) is a pathway-based outlier detection approach for finding pathways showing significant changes in temporal expression patterns across conditions. Given a gene expression data set where each sample is characterized by an age or time point as well as a phenotype (e.g. control or disease), and a collection of gene sets or pathways, TEMPO ranks each pathway by a score that characterizes how well a partial least squares regression (PLSR) model can predict age as a function of gene expression in the controls and how poorly that same model performs in the disease. TEMPO v1.0.3 is described in Pietras (2018) .
How to cite:
Christopher Pietras (2019). tempoR: Characterizing Temporal Dysregulation. R package version 1.0.4.4, https://cran.r-project.org/web/packages/tempoR. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.0.4.4 (2019-05-27 10:30)
Other packages that cited tempoR R package
View tempoR citation profile
Other R packages that tempoR depends, imports, suggests or enhances
Functions, R codes and Examples using the tempoR R package
Some associated functions: dflatExample . gse32472Example . gse32472ExampleTempoResults . loadCLS . loadGCT . loadGMT . tempo.mkplot . tempo.permutationTest . tempo.run . tempo.runInstance . tempo.writeOutput . 
Some associated R codes: data.R . tempoCore.R . tempoInput.R . tempoOutput.R .  Full tempoR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA