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taxonomizr  

Functions to Work with NCBI Accessions and Taxonomy
View on CRAN: Click here


Download and install taxonomizr package within the R console
Install from CRAN:
install.packages("taxonomizr")

Install from Github:
library("remotes")
install_github("cran/taxonomizr")

Install by package version:
library("remotes")
install_version("taxonomizr", "0.11.1")



Attach the package and use:
library("taxonomizr")
Maintained by
Scott Sherrill-Mix
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-03-09
Latest Update: 2025-03-13
Description:
Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.
How to cite:
Scott Sherrill-Mix (2017). taxonomizr: Functions to Work with NCBI Accessions and Taxonomy. R package version 0.11.1, https://cran.r-project.org/web/packages/taxonomizr. Accessed 13 Jun. 2026.
Previous versions and publish date:
0.2.2 (2017-03-09 08:18), 0.5.1 (2018-08-31 22:50), 0.5.3 (2019-04-22 17:40), 0.6.0 (2021-02-09 01:40), 0.7.1 (2021-04-23 17:10), 0.8.0 (2021-05-07 01:20), 0.9.2 (2022-06-23 21:30), 0.9.3 (2022-06-26 23:40), 0.10.2 (2023-01-31 18:20), 0.10.6 (2023-12-15 22:50), 0.10.7 (2025-01-08 17:50), 0.10.8 (2025-02-28 00:20)
Other packages that cited taxonomizr R package
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Complete documentation for taxonomizr
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