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taxonbridge
View on CRAN: Click
here
Download and install taxonbridge package within the R console
Install from CRAN:
install.packages("taxonbridge")
Install from Github:
library("remotes")
install_github("cran/taxonbridge")
Install by package version:
library("remotes")
install_version("taxonbridge", "1.2.2")
Attach the package and use:
library("taxonbridge")
Maintained by
Werner Veldsman
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-01-20
Latest Update: 2022-07-04
Description:
The NCBI taxonomy is a popular resource for taxonomic studies but it only contains data on species with sequence data whereas the GBIF has a more extensive coverage of extinct species. Taxonbridge is useful for the creation and analysis of custom taxonomies based on the NCBI taxonomy and GBIF backbone taxonomy.
How to cite:
Werner Veldsman (2022). taxonbridge: Create Custom Taxonomies Based on the NCBI Taxonomy and GBIF Backbone Taxonomy. R package version 1.2.2, https://cran.r-project.org/web/packages/taxonbridge. Accessed 05 Jan. 2025.
Previous versions and publish date:
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Other R packages that taxonbridge depends,
imports, suggests or enhances
Functions, R codes and Examples using
the taxonbridge R package
Some associated functions: annotate . dedupe . download_gbif . download_ncbi . fuzzy_search . get_inconsistencies . get_lineages . get_status . get_taxa . get_validity . load_population . load_sample . load_taxonomies . plot_mdb . prepare_comparable_rank_dist . prepare_rank_dist . term_conversion .
Some associated R codes: get_methods.R . helper_methods.R . load_methods.R . plot_methods.R . prepare_methods.R . Full taxonbridge package functions and examples
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