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taxize  

Taxonomic Information from Around the Web
View on CRAN: Click here


Download and install taxize package within the R console
Install from CRAN:
install.packages("taxize")

Install from Github:
library("remotes")
install_github("cran/taxize")

Install by package version:
library("remotes")
install_version("taxize", "0.9.100.1")



Attach the package and use:
library("taxize")
Maintained by
ORPHANED
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-12-04
Latest Update: 2022-04-22
Description:
Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.
How to cite:
ORPHANED (2012). taxize: Taxonomic Information from Around the Web. R package version 0.9.100.1, https://cran.r-project.org/web/packages/taxize. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.0.1 (2012-12-04 18:47), 0.0.2 (2012-12-07 11:28), 0.0.3 (2013-01-30 07:29), 0.0.4 (2013-01-31 22:06), 0.0.5 (2013-02-19 21:30), 0.0.6 (2013-08-01 18:50), 0.1.0 (2013-10-27 17:50), 0.1.5 (2013-11-19 07:38), 0.1.8 (2013-12-27 20:13), 0.2.0 (2014-02-17 22:38), 0.2.2 (2014-03-02 08:47), 0.3.0 (2014-05-20 07:37), 0.4.0 (2014-09-09 19:50), 0.5.2 (2014-12-19 07:37), 0.6.0 (2015-06-13 19:00), 0.6.2 (2015-08-07 09:01), 0.6.6 (2015-10-01 13:46), 0.7.0 (2015-11-30 23:57), 0.7.4 (2016-03-09 01:30), 0.7.5 (2016-04-07 00:56), 0.7.6 (2016-05-11 06:18), 0.7.8 (2016-06-17 08:57), 0.7.9 (2016-07-24 00:03), 0.8.0 (2016-12-16 08:34), 0.8.4 (2017-01-19 11:17), 0.8.8 (2017-07-01 17:05), 0.8.9 (2017-07-12 01:10), 0.9.0 (2017-09-28 00:18), 0.9.2 (2018-03-01 18:52), 0.9.3 (2018-03-20 23:18), 0.9.4 (2018-07-24 18:50), 0.9.5 (2019-01-30 12:40), 0.9.6 (2019-02-24 19:00), 0.9.7 (2019-05-09 19:30), 0.9.8 (2019-06-28 08:00), 0.9.9 (2019-10-17 23:10), 0.9.91 (2019-11-15 12:40), 0.9.92 (2020-02-12 06:10), 0.9.93 (2020-03-20 18:30), 0.9.94 (2020-04-01 08:00), 0.9.95 (2020-04-27 22:20), 0.9.96 (2020-05-19 18:40), 0.9.97 (2020-06-09 08:00), 0.9.98 (2020-09-18 19:40), 0.9.99 (2020-10-30 06:50), 0.9.100.1 (2024-08-26 11:37), 0.9.100 (2022-04-22 10:30)
Other packages that cited taxize R package
View taxize citation profile
Other R packages that taxize depends, imports, suggests or enhances
Complete documentation for taxize
Functions, R codes and Examples using the taxize R package
Some associated functions: apg . apg_families . apg_lookup . apg_orders . bold_children . bold_downstream . bold_search . children . class2tree . classification . col-defunct . comm2sci . downstream . eol_dataobjects . eol_hierarchy-defunct . eol_invasive-defunct . eol_pages . eol_search . eubon-defunct . eubon_capabilities . eubon_children . eubon_hierarchy . eubon_search . fungorum . gbif_downstream . gbif_name_usage . gbif_parse . genbank2uid . get_boldid . get_eolid . get_gbifid . get_genes-defunct . get_genes_avail-defunct . get_id_details . get_ids . get_iucn . get_natservid . get_nbnid . get_pow . get_seqs-defunct . get_tolid . get_tpsid . get_tsn . get_ubioid-defunct . get_uid . get_wiki . get_wormsid . getkey . gisd_invasive-defunct . gn_parse . gni_details . gni_parse . gni_search . gnr_datasources . gnr_resolve . id2name . ion . iplant_resolve . ipni_search . itis_acceptname . itis_downstream . itis_getrecord . itis_hierarchy . itis_kingdomnames . itis_lsid . itis_name-deprecated . itis_native . itis_refs . itis_taxrank . itis_terms . iucn_getname . iucn_id . iucn_status . iucn_summary . iucn_summary_id-defunct . key_helpers . limited_print . lowest_common . names_list . nbn_classification . nbn_search . nbn_synonyms . ncbi_children . ncbi_downstream . ncbi_get_taxon_summary . ncbi_getbyid-defunct . ncbi_getbyname-defunct . ncbi_search-defunct . phylomatic_format-defunct . phylomatic_tree-defunct . ping . plantGenusNames . plantNames . plantminer . pow_lookup . pow_search . pow_synonyms . progressor . rank_ref . rank_ref_zoo . rankagg . resolve . sci2comm . scrapenames . species_plantarum_binomials . status_codes . synonyms . tax_agg . tax_name . tax_rank . taxize-authentication . taxize-defunct . taxize-package . taxize-params . taxize_capwords . taxize_cite . taxize_ldfast . taxize_options . taxon-state . taxon_state . theplantlist . tnrs-defunct . tnrs_sources-defunct . tol_resolve . tp_acceptednames-deprecated . tp_accnames . tp_classification-defunct . tp_dist . tp_namedistributions-deprecated . tp_namereferences-deprecated . tp_refs . tp_search . tp_summary . tp_synonyms . tpl_families . tpl_get . tpl_search-defunct . ubio_classification-defunct . ubio_classification_search-defunct . ubio_id-defunct . ubio_ping-defunct . ubio_search-defunct . ubio_synonyms-defunct . upstream . use_eol-defunct . vascan_search . worms_downstream . worrms_ranks . 
Some associated R codes: aaa.R . apg.R . apg_lookup.R . bold_downstream.R . bold_search.R . children.R . class2tree.R . classification.R . col.R . comm2sci.R . downstream-utils.R . downstream.R . eol_dataobjects.R . eol_hierarchy.R . eol_invasive.R . eol_pages.R . eol_search.R . eol_utiils.R . eubon.R . eubon_capabilities.R . eubon_children.R . eubon_hierarchy.R . fungorum.R . gbif_downstream.R . gbif_helpers.R . gbif_name_usage.R . gbif_parse.R . genbank2uid.R . get-id-details.R . get_boldid.R . get_eolid.R . get_gbifid.R . get_ids.R . get_iucn.R . get_natservid.R . get_nbnid.R . get_pow.R . get_tolid.R . get_tpsid.R . get_tsn.R . get_ubioid.R . get_uid.R . get_utils.R . get_wiki.R . get_wormsid.R . getkey.R . gisd_isinvasive.R . globals.R . gn_parse.R . gni_details.R . gni_helpers.R . gni_parse.R . gni_search.R . gnr_datasources.R . gnr_resolve.R . http.R . id2name.R . ion.R . iplant_resolve.R . ipni_search.R . itis_acceptname.R . itis_downstream.R . itis_getrecord.R . itis_hierarchy.R . itis_kingdomnames.R . itis_lsid.R . itis_name.R . itis_native.R . itis_refs.R . itis_taxrank.R . itis_terms.R . iucn_getname.R . iucn_id.R . iucn_summary.R . key_helpers.R . limited_print.R . lowest_common.R . messages.R . nbn_classification.R . nbn_search.R . nbn_synonyms.R . ncbi_children.R . ncbi_downstream.R . ncbi_get_taxon_summary.R . ncbi_getbyid.R . ncbi_getbyname.R . ncbi_search.R . onload.R . phylomatic_format.R . phylomatic_tree.R . ping.R . plantminer.R . pow_search.R . progressor.R . rankagg.R . rename.R . resolve.R . sci2comm.R . status_codes.R . synonyms.R . tax_agg.R . tax_name.R . tax_rank.R . taxize-authentication.R . taxize-package.R . taxize-params.R . taxize_cite.R . taxize_ldfast.R . taxize_options.R . taxon_state.R . tnrs.R . tol_id2name.R . tol_resolve.R . tp_accnames.R . tp_classification.R . tp_dist.R . tp_refs.R . tp_search.R . tp_summary.R . tp_synonyms.R . ubio_classification.R . ubio_classification_search.R . ubio_id.R . ubio_search.R . ubio_synonyms.R . upstream.R . worms_downstream.R . zzz.R .  Full taxize package functions and examples
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