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tagtools  

Work with Data from High-Resolution Biologging Tags
View on CRAN: Click here


Download and install tagtools package within the R console
Install from CRAN:
install.packages("tagtools")

Install from Github:
library("remotes")
install_github("cran/tagtools")

Install by package version:
library("remotes")
install_version("tagtools", "0.2.0")



Attach the package and use:
library("tagtools")
Maintained by
Stacy DeRuiter
[Scholar Profile | Author Map]
First Published: 2023-07-18
Latest Update: 2023-07-18
Description:
High-resolution movement-sensor tags typically include accelerometers to measure body posture and sudden movements or changes in speed, magnetometers to measure direction of travel, and pressure sensors to measure dive depth in aquatic or marine animals. The sensors in these tags usually sample many times per second. Some tags include sensors for speed, turning rate (gyroscopes), and sound. This package provides software tools to facilitate calibration, processing, and analysis of such data. Tools are provided for: data import/export; calibration (from raw data to calibrated data in scientific units); visualization (for example, multi-panel time-series plots); data processing (such as event detection, calculation of derived metrics like jerk and dynamic acceleration, dive detection, and dive parameter calculation); and statistical analysis (for example, track reconstruction, a rotation test, and Mahalanobis distance analysis).
How to cite:
Stacy DeRuiter (2023). tagtools: Work with Data from High-Resolution Biologging Tags. R package version 0.2.0, https://cran.r-project.org/web/packages/tagtools. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.1.0 (2023-07-18 11:10)
Other packages that cited tagtools R package
View tagtools citation profile
Other R packages that tagtools depends, imports, suggests or enhances
Complete documentation for tagtools
Functions, R codes and Examples using the tagtools R package
Some associated functions: a2pr . absorption . acc_wgs84 . add_nc . apply_cal . beaked_whale . block_acf . block_mean . block_rms . body_axes . buffer . check_AM . cline . col_line . col_line3 . comp_filt . crop . crop_all . crop_to . csv2struct . decdc . decz . depth2pressure . depth_rate . detect_peaks . dive_stats . draw_axis . dsf . euler2rotmat . extract . extract_cues . find_dives . fir_nodelay . fit_tracks . fix_offset_3d . fix_pressure . get_researcher . get_species . harbor_seal . hilbert_env . hilbert_transform . htrack . image_irreg . inclination . interp2length . interp_nan . inv_axis . julian_day . lalo2llf . load_nc . m2h . m_dist . make_info . make_specgram . mean_absorption . median_filter . merge_fields . metadata_editor . msa . njerk . norm2 . ocdr . odba . plott . prh_predictor1 . prh_predictor2 . ptrack . read_cats . read_cats_csv . rotate_data . rotate_vecs . rotation_test . rotmat2euler . rough_cal_3d . save_nc . sens_struct . smooth . sound_speed . spectrum_level . speed_from_depth . spherical_cal . tag2animal . tortuosity . track3D . undo_cal . zero_crossings . 
Some associated R codes: a2pr.R . absorption.R . acc_wgs84.R . add_nc.R . apply_cal.R . applymethod1.R . applymethod2.R . block_acf.R . block_mean.R . block_rms.R . body_axes.R . buffer.R . check_AM.R . cline.R . col_line.R . col_line3.R . comp_filt.R . crop.R . crop_all.R . crop_to.R . crosshairs.R . csv2struct.R . data.R . decdc.R . decz.R . depth2pressure.R . depth_rate.R . detect_peaks.R . dive_stats.R . draw_axis.R . dsf.R . euler2rotmat.R . extract.R . extract_cues.R . find_dives.R . fir_nodelay.R . fit_tracks.R . fix_offset_3d.R . fix_pressure.R . get_clicked_pt.R . get_researcher.R . get_species.R . hilbert_env.R . hilbert_transform.R . htrack.R . image_irreg.R . inclination.R . interp2length.R . interp_nan.R . inv_axis.R . julian_day.R . keybd1.R . keybd2.R . lalo2llf.R . load_nc.R . m2h.R . m_dist.R . make_info.R . make_specgram.R . mean_absorption.R . median_filter.R . merge_fields.R . metadata_editor.R . mousedown1.R . msa.R . njerk.R . norm2.R . ocdr.R . odba.R . plot_prh_fig1.R . plot_prh_fig2.R . plot_prh_fig2_m2.R . plott.R . prh_predictor1.R . prh_predictor2.R . ptrack.R . read_cats.R . read_cats_csv.R . rotate_data.R . rotate_vecs.R . rotation_test.R . rotmat2euler.R . rough_cal_3d.R . save_nc.R . sens_struct.R . smooth.R . sound_speed.R . spectrum_level.R . speed_from_depth.R . spherical_cal.R . tag2animal.R . tortuosity.R . track3D.R . undo_cal.R . zero_crossings.R .  Full tagtools package functions and examples
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