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syntenyPlotteR  

Genome Synteny Visualization
View on CRAN: Click here


Download and install syntenyPlotteR package within the R console
Install from CRAN:
install.packages("syntenyPlotteR")

Install from Github:
library("remotes")
install_github("cran/syntenyPlotteR")

Install by package version:
library("remotes")
install_version("syntenyPlotteR", "1.0.0")



Attach the package and use:
library("syntenyPlotteR")
Maintained by
Marta Farre
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-10-03
Latest Update: 2023-10-03
Description:
Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.
How to cite:
Marta Farre (2023). syntenyPlotteR: Genome Synteny Visualization. R package version 1.0.0, https://cran.r-project.org/web/packages/syntenyPlotteR. Accessed 31 Jan. 2025.
Previous versions and publish date:
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Complete documentation for syntenyPlotteR
Functions, R codes and Examples using the syntenyPlotteR R package
Some associated functions: draw.eh . draw.ideogram . draw.linear . reformat.syntenyData . syntenyPlotteR-package . 
Some associated R codes: DrawSyntenyPlot.R . SyntenyPlotteR-package.R . reformat.syntenyData.R .  Full syntenyPlotteR package functions and examples
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