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surveil  

Time Series Models for Disease Surveillance
View on CRAN: Click here


Download and install surveil package within the R console
Install from CRAN:
install.packages("surveil")

Install from Github:
library("remotes")
install_github("cran/surveil")

Install by package version:
library("remotes")
install_version("surveil", "0.3.0")



Attach the package and use:
library("surveil")
Maintained by
Connor Donegan
[Scholar Profile | Author Map]
First Published: 2021-11-11
Latest Update: 2022-08-22
Description:
Fits time series models for routine disease surveillance tasks and returns probability distributions for a variety of quantities of interest, including age-standardized rates, period and cumulative percent change, and measures of health inequality. Calculates Theil's index to measure inequality among multiple groups, and can be extended to measure inequality across multiple groups nested within geographies. Inference is completed using Markov chain Monte Carlo via the Stan modeling language. The models are appropriate for count data such as disease incidence and mortality data, employing a Poisson or binomial likelihood and the first-difference (random-walk) prior for unknown risk. Optionally add a covariance matrix for multiple, correlated time series models. References: Donegan, Hughes, and Lee (2022) <doi:10.2196/34589>; Stan Development Team (2021) <https://mc-stan.org>; Theil (1972, ISBN:0-444-10378-3).
How to cite:
Connor Donegan (2021). surveil: Time Series Models for Disease Surveillance. R package version 0.3.0, https://cran.r-project.org/web/packages/surveil. Accessed 22 Apr. 2025.
Previous versions and publish date:
0.1.0 (2021-11-11 10:10), 0.1.1 (2022-01-03 17:50), 0.2.0 (2022-04-03 20:40), 0.2.1 (2022-08-22 09:50), 0.2.2 (2023-10-03 02:50)
Other packages that cited surveil R package
View surveil citation profile
Other R packages that surveil depends, imports, suggests or enhances
Complete documentation for surveil
Functions, R codes and Examples using the surveil R package
Some associated functions: apc . cancer . group_diff . msa . plot.surveil . print.apc . priors . stan_rw . stand_surveil . standard . standardize . surveil-package . surveil_diff . theil . theil_methods . waic . 
Some associated R codes: apc.R . data.R . gg-theme-surveil.R . group-diff.R . methods.R . priors.R . stan_rw.R . stanmodels.R . surveil-package.R . theil.R .  Full surveil package functions and examples
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