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surface
View on CRAN: Click
here
Download and install surface package within the R console
Install from CRAN:
install.packages("surface")
Install from Github:
library("remotes")
install_github("cran/surface")
Install by package version:
library("remotes")
install_version("surface", "0.6")
Attach the package and use:
library("surface")
Maintained by
Travis Ingram
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.surface . surface citation info . surface results . surface.pdf . Introduction to surface . surface_0.6.tar.gz . surface_0.6.zip . surface_0.6.zip . surface_0.6.zip . surface_0.6.tgz . surface_0.6.tgz . surface_0.6.tgz . surface_0.6.tgz . surface_0.6.tgz . surface_0.6.tgz . surface archive . https://CRAN.R-project.org/package=surface .
First Published: 2013-01-04
Latest Update: 2020-12-18
Description:
This data-driven phylogenetic comparative method fits stabilizing selection models to continuous trait data, building on the 'ouch' methodology of Butler and King (2004) <doi:10.1086/426002>. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak. For more information see Ingram and Mahler (2013) <doi:10.1111/2041-210X.12034>.
How to cite:
Travis Ingram (2013). surface: Fitting Hansen Models to Investigate Convergent Evolution. R package version 0.6, https://cran.r-project.org/web/packages/surface. Accessed 29 Mar. 2025.
Previous versions and publish date:
Other packages that cited surface R package
View surface citation profile
Other R packages that surface depends,
imports, suggests or enhances
Complete documentation for surface
Functions, R codes and Examples using
the surface R package
Some associated functions: convertTreeData . getAIC . getBranchTimes . ouchDescendants . propRegMatch . repaint . runSurface . startingModel . surface-package . surfaceAICPlot . surfaceBackward . surfaceDemo . surfaceForward . surfaceSimulate . surfaceSummary . surfaceTreePlot .
Some associated R codes: addRegime.R . collapseRegimes.R . convertBack.R . convertTreeData.R . getAIC.R . getBranchTimes.R . nameNodes.R . npSurface.R . ouchDescendants.R . propRegMatch.R . repaint.R . runSurface.R . startingModel.R . surfaceAICMultiPlot.R . surfaceAICPlot.R . surfaceBackward.R . surfaceForward.R . surfaceSimulate.R . surfaceSummary.R . surfaceTraitPlot.R . surfaceTreePlot.R . Full surface package functions and examples
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