Other packages > Find by keyword >

superspreading  

Understand Individual-Level Variation in Infectious Disease Transmission
View on CRAN: Click here


Download and install superspreading package within the R console
Install from CRAN:
install.packages("superspreading")

Install from Github:
library("remotes")
install_github("cran/superspreading")

Install by package version:
library("remotes")
install_version("superspreading", "0.4.0")



Attach the package and use:
library("superspreading")
Maintained by
Joshua W. Lambert
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-01-27
Latest Update: 2025-07-15
Description:
Estimate and understand individual-level variation in transmission. Implements density and cumulative compound Poisson discrete distribution functions ('Kremer et al.' (2021) <doi:10.1038/s41598-021-93578-x>), as well as functions to calculate infectious disease outbreak statistics given epidemiological parameters on individual-level transmission; including the probability of an outbreak becoming an epidemic/extinct ('Kucharski et al.' (2020) <doi:10.1016/S1473-3099(20)30144-4>), or the cluster size statistics, e.g. what proportion of cases cause X\% of transmission ('Lloyd-Smith et al.' (2005) <doi:10.1038/nature04153>).
How to cite:
Joshua W. Lambert (2025). superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. R package version 0.4.0, https://cran.r-project.org/web/packages/superspreading. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:10), 0.3.0 (2025-01-27 19:40)
Other packages that cited superspreading R package
View superspreading citation profile
Other R packages that superspreading depends, imports, suggests or enhances
Complete documentation for superspreading
Functions, R codes and Examples using the superspreading R package
Full superspreading package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA