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superspreading  

Understand Individual-Level Variation in Infectious Disease Transmission
View on CRAN: Click here


Download and install superspreading package within the R console
Install from CRAN:
install.packages("superspreading")

Install from Github:
library("remotes")
install_github("cran/superspreading")

Install by package version:
library("remotes")
install_version("superspreading", "0.3.0")



Attach the package and use:
library("superspreading")
Maintained by
Joshua W. Lambert
[Scholar Profile | Author Map]
First Published: 2025-01-27
Latest Update: 2025-01-27
Description:
Estimate and understand individual-level variation in transmission. Implements density and cumulative compound Poisson discrete distribution functions ('Kremer et al.' (2021) <doi:10.1038/s41598-021-93578-x>), as well as functions to calculate infectious disease outbreak statistics given epidemiological parameters on individual-level transmission; including the probability of an outbreak becoming an epidemic/extinct ('Kucharski et al.' (2020) <doi:10.1016/S1473-3099(20)30144-4>), or the cluster size statistics, e.g. what proportion of cases cause X\% of transmission ('Lloyd-Smith et al.' (2005) <doi:10.1038/nature04153>).
How to cite:
Joshua W. Lambert (2025). superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. R package version 0.3.0, https://cran.r-project.org/web/packages/superspreading. Accessed 09 May. 2025.
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Complete documentation for superspreading
Functions, R codes and Examples using the superspreading R package
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