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sumFREGAT  

Fast Region-Based Association Tests on Summary Statistics
View on CRAN: Click here


Download and install sumFREGAT package within the R console
Install from CRAN:
install.packages("sumFREGAT")

Install from Github:
library("remotes")
install_github("cran/sumFREGAT")

Install by package version:
library("remotes")
install_version("sumFREGAT", "1.2.5")



Attach the package and use:
library("sumFREGAT")
Maintained by
Nadezhda M. Belonogova
[Scholar Profile | Author Map]
First Published: 2018-01-17
Latest Update: 2022-06-07
Description:
An adaptation of classical region/gene-based association analysis techniques to the use of summary statistics (P values and effect sizes) and correlations between genetic variants as input. It is a tool to perform the most popular and efficient gene-based tests using the results of genome-wide association (meta-)analyses without having the original genotypes and phenotypes at hand. See for details: Svishcheva et al (2019) Gene-based association tests using GWAS summary statistics. Bioinformatics. Belonogova et al (2022) SumSTAAR: A flexible framework for gene-based association studies using GWAS summary statistics. PLOS Comp Biol.
How to cite:
Nadezhda M. Belonogova (2018). sumFREGAT: Fast Region-Based Association Tests on Summary Statistics. R package version 1.2.5, https://cran.r-project.org/web/packages/sumFREGAT. Accessed 22 Apr. 2025.
Previous versions and publish date:
1.0.0 (2018-01-17 12:55), 1.1.0 (2018-11-15 10:20), 1.2.0 (2020-12-16 19:30), 1.2.1 (2021-02-28 12:30), 1.2.2 (2021-10-19 19:30), 1.2.3 (2022-03-09 11:00), 1.2.4 (2022-03-24 11:10)
Other packages that cited sumFREGAT R package
View sumFREGAT citation profile
Other R packages that sumFREGAT depends, imports, suggests or enhances
Complete documentation for sumFREGAT
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