Other packages > Find by keyword >

sumFREGAT  

Fast Region-Based Association Tests on Summary Statistics
View on CRAN: Click here


Download and install sumFREGAT package within the R console
Install from CRAN:
install.packages("sumFREGAT")

Install from Github:
library("remotes")
install_github("cran/sumFREGAT")

Install by package version:
library("remotes")
install_version("sumFREGAT", "1.2.5")



Attach the package and use:
library("sumFREGAT")
Maintained by
Nadezhda M. Belonogova
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-17
Latest Update: 2022-06-07
Description:
An adaptation of classical region/gene-based association analysis techniques to the use of summary statistics (P values and effect sizes) and correlations between genetic variants as input. It is a tool to perform the most popular and efficient gene-based tests using the results of genome-wide association (meta-)analyses without having the original genotypes and phenotypes at hand. See for details: Svishcheva et al (2019) Gene-based association tests using GWAS summary statistics. Bioinformatics. Belonogova et al (2022) SumSTAAR: A flexible framework for gene-based association studies using GWAS summary statistics. PLOS Comp Biol.
How to cite:
Nadezhda M. Belonogova (2018). sumFREGAT: Fast Region-Based Association Tests on Summary Statistics. R package version 1.2.5, https://cran.r-project.org/web/packages/sumFREGAT
Previous versions and publish date:
1.0.0 (2018-01-17 12:55), 1.1.0 (2018-11-15 10:20), 1.2.0 (2020-12-16 19:30), 1.2.1 (2021-02-28 12:30), 1.2.2 (2021-10-19 19:30), 1.2.3 (2022-03-09 11:00), 1.2.4 (2022-03-24 11:10)
Other packages that cited sumFREGAT R package
View sumFREGAT citation profile
Other R packages that sumFREGAT depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

multiocc  
Fits Multivariate Spatio-Temporal Occupancy Model
Spatio-temporal multivariate occupancy models can handle multiple species in occupancy models. This ...
Download / Learn more Package Citations See dependency  
CompoundEvents  
Statistical Modeling of Compound Events
Tools for extracting occurrences, assessing potential driving factors, predicting occurrences, and q ...
Download / Learn more Package Citations See dependency  
gclus  
Clustering Graphics
Orders panels in scatterplot matrices and parallel coordinate displays by some merit index. Package ...
Download / Learn more Package Citations See dependency  
MatrixEQTL  
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for associat ...
Download / Learn more Package Citations See dependency  
ismev  
An Introduction to Statistical Modeling of Extreme Values
Functions to support the computations carried out in `An Introduction to Statistical Modeling of Ex ...
Download / Learn more Package Citations See dependency  
stagePop  
Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time
Provides facilities to implement and run population models of stage-structured species... ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns