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sumFREGAT
View on CRAN: Click
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Download and install sumFREGAT package within the R console
Install from CRAN:
install.packages("sumFREGAT")
Install from Github:
library("remotes")
install_github("cran/sumFREGAT")
Install by package version:
library("remotes")
install_version("sumFREGAT", "1.2.5")
Attach the package and use:
library("sumFREGAT")
Maintained by
Nadezhda M. Belonogova
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-17
Latest Update: 2022-06-07
Description:
An adaptation of classical region/gene-based association analysis techniques to the use of summary statistics (P values and effect sizes) and correlations between genetic variants as input. It is a tool to perform the most popular and efficient gene-based tests using the results of genome-wide association (meta-)analyses without having the original genotypes and phenotypes at hand. See for details: Svishcheva et al (2019) Gene-based association tests using GWAS summary statistics. Bioinformatics. Belonogova et al (2022) SumSTAAR: A flexible framework for gene-based association studies using GWAS summary statistics. PLOS Comp Biol.
How to cite:
Nadezhda M. Belonogova (2018). sumFREGAT: Fast Region-Based Association Tests on Summary Statistics. R package version 1.2.5, https://cran.r-project.org/web/packages/sumFREGAT
Previous versions and publish date:
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Other R packages that sumFREGAT depends,
imports, suggests or enhances
Functions, R codes and Examples using
the sumFREGAT R package
Some associated functions:
Some associated R codes: ACAT.R . ACATO.R . BT.R . FLM.R . KMTest_Optimal.R . Lfd.R . PCA.R . SKAT.R . SKATO.R . basisfd.R . bsplineS.R . check.R . chisqsum.R . create.bspline.basis.R . create.constant.basis.R . create.fourier.basis.R . davies.R . eval.basis.R . eval.fd.R . fd.R . fd2list.R . fourier.R . function.R . genewise.R . get.sumstat.R . getbasismatrix.R . inprod.R . inprod.bspline.R . int2Lfd.R . is.eqbasis.R . minp.R . polyprod.R . ppBspline.R . ppderiv.R . prep.score.files.R . rangechk.R . simpleM.R . skat-misc_SKATh.R . sumSTAAR.R . sumchi.R . Full sumFREGAT package functions and examples
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