Other packages > Find by keyword >

stops  

Structure Optimized Proximity Scaling
View on CRAN: Click here


Download and install stops package within the R console
Install from CRAN:
install.packages("stops")

Install from Github:
library("remotes")
install_github("cran/stops")

Install by package version:
library("remotes")
install_version("stops", "1.9-1")



Attach the package and use:
library("stops")
Maintained by
Thomas Rusch
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-20
Latest Update: 2025-04-28
Description:
A collection of methods that fit nonlinear distance transformations in multidimensional scaling (MDS) and trade-off the fit with structure considerations to find optimal parameters also known as structure optimized proximity scaling (STOPS) (Rusch, Mair & Hornik, 2023,<doi:10.1007/s11222-022-10197-w>). The package contains various functions, wrappers, methods and classes for fitting, plotting and displaying different MDS models in a STOPS framework like Torgerson (classical) scaling, scaling by majorizing a complex function (SMACOF), Sammon mapping, elastic scaling, symmetric SMACOF, spherical SMACOF, s-stress, r-stress, power MDS, power elastic scaling, power Sammon mapping, power stress MDS (POST-MDS), approximate power stress, Box-Cox MDS, local MDS and Isomap. All of these models can also be fit individually with given hyperparameters or by optimizing over hyperparameters based on fit only (i.e., no structure considerations). The package further contains functions for optimization, specifically the adaptive Luus-Jaakola algorithm and a wrapper for Bayesian optimization with treed Gaussian process with jumps to linear models, and functions for various c-structuredness indices.
How to cite:
Thomas Rusch (2023). stops: Structure Optimized Proximity Scaling. R package version 1.9-1, https://cran.r-project.org/web/packages/stops. Accessed 28 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:09), 1.0-1 (2023-01-20 11:10), 1.6-2 (2024-06-28 09:30), 1.8-2 (2024-09-22 21:50)
Other packages that cited stops R package
View stops citation profile
Other R packages that stops depends, imports, suggests or enhances
Complete documentation for stops
Functions, R codes and Examples using the stops R package
Some associated functions: BankingCrisesDistances . Pendigits500 . Swissroll . apStressMin . bcStressMin . c_association . c_clumpiness . c_clusteredness . c_complexity . c_convexity . c_dependence . c_faithfulness . c_functionality . c_hierarchy . c_inequality . c_linearity . c_manifoldness . c_mine . c_nonmonotonicity . c_outlying . c_regularity . c_skinniness . c_sparsity . c_striatedness . c_stringiness . cmds . cmdscale . coef.stops . conf_adjust . doubleCenter . enorm . knn_dist . ljoptim . lmds . mkBmat . mkPower . mkPower2 . plot.cmdscaleE . plot.smacofP . plot.stops . plot3d.cmdscaleE . plot3d.stops . plot3dstatic.cmdscaleE . plot3dstatic . plot3dstatic.stops . powerStressMin . print.cmdscale . print.sammon . print.stops . print.summary.smacofP . print.summary.stops . procruster . residuals.stops . sammon . secularEq . sqdist . stop_apstress . stop_bcstress . stop_cmdscale . stop_elastic . stop_isomap1 . stop_isomap2 . stop_lmds . stop_powerelastic . stop_powermds . stop_powersammon . stop_powerstress . stop_rpowerstress . stop_rstress . stop_sammon . stop_sammon2 . stop_smacofSphere . stop_smacofSym . stop_sstress . stoploss . stops . summary.cmdscale . summary.sammon . summary.smacofP . summary.stops . tgpoptim . torgerson . 
Some associated R codes: BankingCrisesDistances-data.R . Pendigits500-data.R . Swissroll-data.R . bcstress.R . extras.R . lmds.R . optimizations.R . powerstress.R . stops-package.R . stops.R . structurednessindices.R .  Full stops package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

shinyFeedback  
Display User Feedback in Shiny Apps
Easily display user feedback in Shiny apps. ...
Download / Learn more Package Citations See dependency  
RGIFT  
Create Quizzes in GIFT Format
Implementation of some functions to create quizzes in the GIFT format. This format is used by sever ...
Download / Learn more Package Citations See dependency  
NPflow  
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data
Dirichlet process mixture of multivariate normal, skew normal or skew t-distributions modeling orie ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
survivalMPLdc  
Penalised Likelihood for Survival Analysis with Dependent Censoring
Fitting Cox proportional hazard model under dependent right censoring using copula and maximum penal ...
Download / Learn more Package Citations See dependency  
mxnorm  
Apply Normalization Methods to Multiplexed Images
Implements methods to normalize multiplexed imaging data, including statistical metrics and visuali ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA