Other packages > Find by keyword >

stops  

Structure Optimized Proximity Scaling
View on CRAN: Click here


Download and install stops package within the R console
Install from CRAN:
install.packages("stops")

Install from Github:
library("remotes")
install_github("cran/stops")

Install by package version:
library("remotes")
install_version("stops", "1.9-1")



Attach the package and use:
library("stops")
Maintained by
Thomas Rusch
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-20
Latest Update: 2025-04-28
Description:
A collection of methods that fit nonlinear distance transformations in multidimensional scaling (MDS) and trade-off the fit with structure considerations to find optimal parameters also known as structure optimized proximity scaling (STOPS) (Rusch, Mair & Hornik, 2023,<doi:10.1007/s11222-022-10197-w>). The package contains various functions, wrappers, methods and classes for fitting, plotting and displaying different MDS models in a STOPS framework like Torgerson (classical) scaling, scaling by majorizing a complex function (SMACOF), Sammon mapping, elastic scaling, symmetric SMACOF, spherical SMACOF, s-stress, r-stress, power MDS, power elastic scaling, power Sammon mapping, power stress MDS (POST-MDS), approximate power stress, Box-Cox MDS, local MDS and Isomap. All of these models can also be fit individually with given hyperparameters or by optimizing over hyperparameters based on fit only (i.e., no structure considerations). The package further contains functions for optimization, specifically the adaptive Luus-Jaakola algorithm and a wrapper for Bayesian optimization with treed Gaussian process with jumps to linear models, and functions for various c-structuredness indices.
How to cite:
Thomas Rusch (2023). stops: Structure Optimized Proximity Scaling. R package version 1.9-1, https://cran.r-project.org/web/packages/stops. Accessed 08 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:09), 1.0-1 (2023-01-20 11:10), 1.6-2 (2024-06-28 09:30), 1.8-2 (2024-09-22 21:50)
Other packages that cited stops R package
View stops citation profile
Other R packages that stops depends, imports, suggests or enhances
Complete documentation for stops
Functions, R codes and Examples using the stops R package
Some associated functions: BankingCrisesDistances . Pendigits500 . Swissroll . apStressMin . bcStressMin . c_association . c_clumpiness . c_clusteredness . c_complexity . c_convexity . c_dependence . c_faithfulness . c_functionality . c_hierarchy . c_inequality . c_linearity . c_manifoldness . c_mine . c_nonmonotonicity . c_outlying . c_regularity . c_skinniness . c_sparsity . c_striatedness . c_stringiness . cmds . cmdscale . coef.stops . conf_adjust . doubleCenter . enorm . knn_dist . ljoptim . lmds . mkBmat . mkPower . mkPower2 . plot.cmdscaleE . plot.smacofP . plot.stops . plot3d.cmdscaleE . plot3d.stops . plot3dstatic.cmdscaleE . plot3dstatic . plot3dstatic.stops . powerStressMin . print.cmdscale . print.sammon . print.stops . print.summary.smacofP . print.summary.stops . procruster . residuals.stops . sammon . secularEq . sqdist . stop_apstress . stop_bcstress . stop_cmdscale . stop_elastic . stop_isomap1 . stop_isomap2 . stop_lmds . stop_powerelastic . stop_powermds . stop_powersammon . stop_powerstress . stop_rpowerstress . stop_rstress . stop_sammon . stop_sammon2 . stop_smacofSphere . stop_smacofSym . stop_sstress . stoploss . stops . summary.cmdscale . summary.sammon . summary.smacofP . summary.stops . tgpoptim . torgerson . 
Some associated R codes: BankingCrisesDistances-data.R . Pendigits500-data.R . Swissroll-data.R . bcstress.R . extras.R . lmds.R . optimizations.R . powerstress.R . stops-package.R . stops.R . structurednessindices.R .  Full stops package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

productplots  
Product Plots for R
Framework for visualising tables of counts, proportions and probabilities. The framework is called ...
Download / Learn more Package Citations See dependency  
Morpho  
Calculations and Visualisations Related to Geometric Morphometrics
A toolset for Geometric Morphometrics and mesh processing. This includes (among other stuff) mesh d ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
box  
Write Reusable, Composable and Modular R Code
A modern module system for R. Organise code into hierarchical, composable, reusable modules, and us ...
Download / Learn more Package Citations See dependency  
skewt  
The Skewed Student-t Distribution
Density, distribution function, quantile function and random generation for the skewed t distributio ...
Download / Learn more Package Citations See dependency  
FastGaSP  
Fast and Exact Computation of Gaussian Stochastic Process
Implements fast and exact computation of Gaussian stochastic process with the Matern kernel using fo ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,752

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA