Other packages > Find by keyword >

stockR  

Identifying Stocks in Genetic Data
View on CRAN: Click here


Download and install stockR package within the R console
Install from CRAN:
install.packages("stockR")

Install from Github:
library("remotes")
install_github("cran/stockR")

Install by package version:
library("remotes")
install_version("stockR", "1.0.76")



Attach the package and use:
library("stockR")
Maintained by
Scott D. Foster
[Scholar Profile | Author Map]
First Published: 2018-06-14
Latest Update: 2023-04-26
Description:
Provides a mixture model for clustering individuals (or sampling groups) into stocks based on their genetic profile. Here, sampling groups are individuals that are sure to come from the same stock (e.g. breeding adults or larvae). The mixture (log-)likelihood is maximised using the EM-algorithm after finding good starting values via a K-means clustering of the genetic data. Details can be found in: Foster, S. D.; Feutry, P.; Grewe, P. M.; Berry, O.; Hui, F. K. C. & Davies (2020) <doi:10.1111/1755-0998.12920>.
How to cite:
Scott D. Foster (2018). stockR: Identifying Stocks in Genetic Data. R package version 1.0.76, https://cran.r-project.org/web/packages/stockR. Accessed 03 May. 2025.
Previous versions and publish date:
1.0.68 (2018-06-14 20:32), 1.0.73 (2020-02-06 01:30), 1.0.74 (2020-03-04 07:00)
Other packages that cited stockR R package
View stockR citation profile
Other R packages that stockR depends, imports, suggests or enhances
Complete documentation for stockR
Functions, R codes and Examples using the stockR R package
Some associated functions: calcFst . plot.stockBOOT . sim.stock.data . stockBOOT . stockSTRUCTURE . 
Some associated R codes: stockR.R .  Full stockR package functions and examples
Downloads during the last 30 days
04/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/30Downloads for stockR02468101214161820TrendBars

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
farrell  
Interactive Interface to Data Envelopment Analysis Modeling
Allows the user to execute interactively radial data envelopment analysis models. The user has the a ...
Download / Learn more Package Citations See dependency  
nlsem  
Fitting Structural Equation Mixture Models
Estimation of structural equation models with nonlinear effects and underlying nonnormal distributi ...
Download / Learn more Package Citations See dependency  
mlr3fselect  
Feature Selection for 'mlr3'
Feature selection package of the 'mlr3' ecosystem. It selects the optimal feature set for any 'mlr3 ...
Download / Learn more Package Citations See dependency  
grabsampling  
Probability of Detection for Grab Sample Selection
Functions for obtaining the probability of detection, for grab samples selection by using two differ ...
Download / Learn more Package Citations See dependency  
TestDesign  
Optimal Test Design Approach to Fixed and Adaptive Test Construction
Uses the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and van der Linden (201 ...
Download / Learn more Package Citations See dependency  

24,142

R Packages

207,311

Dependencies

65,312

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA