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stockR  

Identifying Stocks in Genetic Data
View on CRAN: Click here


Download and install stockR package within the R console
Install from CRAN:
install.packages("stockR")

Install from Github:
library("remotes")
install_github("cran/stockR")

Install by package version:
library("remotes")
install_version("stockR", "1.0.76")



Attach the package and use:
library("stockR")
Maintained by
Scott D. Foster
[Scholar Profile | Author Map]
First Published: 2018-06-14
Latest Update: 2023-04-26
Description:
Provides a mixture model for clustering individuals (or sampling groups) into stocks based on their genetic profile. Here, sampling groups are individuals that are sure to come from the same stock (e.g. breeding adults or larvae). The mixture (log-)likelihood is maximised using the EM-algorithm after finding good starting values via a K-means clustering of the genetic data. Details can be found in: Foster, S. D.; Feutry, P.; Grewe, P. M.; Berry, O.; Hui, F. K. C. & Davies (2020) <doi:10.1111/1755-0998.12920>.
How to cite:
Scott D. Foster (2018). stockR: Identifying Stocks in Genetic Data. R package version 1.0.76, https://cran.r-project.org/web/packages/stockR. Accessed 08 Apr. 2025.
Previous versions and publish date:
1.0.68 (2018-06-14 20:32), 1.0.73 (2020-02-06 01:30), 1.0.74 (2020-03-04 07:00)
Other packages that cited stockR R package
View stockR citation profile
Other R packages that stockR depends, imports, suggests or enhances
Complete documentation for stockR
Functions, R codes and Examples using the stockR R package
Some associated functions: calcFst . plot.stockBOOT . sim.stock.data . stockBOOT . stockSTRUCTURE . 
Some associated R codes: stockR.R .  Full stockR package functions and examples
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