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stockR
View on CRAN: Click
here
Download and install stockR package within the R console
Install from CRAN:
install.packages("stockR")
Install from Github:
library("remotes")
install_github("cran/stockR") Install by package version:
library("remotes")
install_version("stockR", "1.0.76") Attach the package and use:
library("stockR")
Maintained by
Scott D. Foster
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-14
Latest Update: 2023-04-26
Description:
Provides a mixture model for clustering individuals (or sampling groups) into stocks based on their genetic profile. Here, sampling groups are individuals that are sure to come from the same stock (e.g. breeding adults or larvae). The mixture (log-)likelihood is maximised using the EM-algorithm after finding good starting values via a K-means clustering of the genetic data. Details can be found in: Foster, S. D.; Feutry, P.; Grewe, P. M.; Berry, O.; Hui, F. K. C. & Davies (2020) <doi:10.1111/1755-0998.12920>.
How to cite:
Scott D. Foster (2018). stockR: Identifying Stocks in Genetic Data. R package version 1.0.76, https://cran.r-project.org/web/packages/stockR. Accessed 06 Oct. 2026.
Previous versions and publish date:
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Other R packages that stockR depends,
imports, suggests or enhances
Complete documentation for stockR
Functions, R codes and Examples using
the stockR R package
Some associated functions: calcFst . plot.stockBOOT . sim.stock.data . stockBOOT . stockSTRUCTURE .
Some associated R codes: stockR.R . Full stockR package functions and examples
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