R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
stochprofML
View on CRAN: Click
here
Download and install stochprofML package within the R console
Install from CRAN:
install.packages("stochprofML")
Install from Github:
library("remotes")
install_github("cran/stochprofML")
Install by package version:
library("remotes")
install_version("stochprofML", "2.0.3")
Attach the package and use:
library("stochprofML")
Maintained by
Lisa Amrhein
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-05-22
Latest Update: 2020-06-10
Description:
New Version of the R package originally accompanying the paper
"Parameterizing cell-to-cell regulatory heterogeneities via stochastic transcriptional profiles"
by Sameer S Bajikar, Christiane Fuchs, Andreas Roller, Fabian J Theis and Kevin A Janes
(PNAS 2014, 111(5), E626-635 ). In this paper, we measure expression profiles
from small heterogeneous populations of cells, where each cell is assumed to be from a mixture of
lognormal distributions. We perform maximum likelihood estimation in order to infer the mixture ratio and
the parameters of these lognormal distributions from the cumulated expression measurements.
The main difference of this new package version to the previous one is that it is now possible to use
different n's, i.e. a dataset where each tissue sample originates from a different number of cells.
We used this on pheno-seq data, see: Tirier, S.M., Park, J., Preusser, F. et al. Pheno-seq - linking visual
features and gene expression in 3D cell culture systems. Sci Rep 9, 12367 (2019)
).
How to cite:
Lisa Amrhein (2014). stochprofML: Stochastic Profiling using Maximum Likelihood Estimation. R package version 2.0.3, https://cran.r-project.org/web/packages/stochprofML. Accessed 03 Dec. 2024.
Previous versions and publish date:
Other packages that cited stochprofML R package
View stochprofML citation profile
Other R packages that stochprofML depends,
imports, suggests or enhances
Functions, R codes and Examples using
the stochprofML R package
Some associated functions: analyze.sod2 . analyze.toycluster . calculate.ci.EXPLN . calculate.ci.LNLN . calculate.ci.rLNLN . comb.summands . d.sum.of.mixtures.EXPLN . d.sum.of.mixtures.LNLN . d.sum.of.mixtures.rLNLN . generate.toydata . mix.d.sum.of.mixtures.EXPLN . mix.d.sum.of.mixtures.LNLN . mix.d.sum.of.mixtures.rLNLN . penalty.constraint.EXPLN . penalty.constraint.LNLN . penalty.constraint.rLNLN . set.model.functions . sod2 . stochasticProfilingData . stochasticProfilingML . stochprof.loop . stochprof.results.EXPLN . stochprof.results.LNLN . stochprof.results.rLNLN . stochprof.search.EXPLN . stochprof.search.LNLN . stochprof.search.rLNLN . stochprofML-package . toycluster.EXPLN . toycluster.LNLN . toycluster.rLNLN .
Some associated R codes: analyze.sod2.R . analyze.toycluster.R . backtransform.par.EXPLN.R . backtransform.par.LNLN.R . backtransform.par.rLNLN.R . calculate.ci.EXPLN.R . calculate.ci.LNLN.R . calculate.ci.rLNLN.R . comb.summands.R . d.sum.of.exp.types.R . d.sum.of.lognormal.types.R . d.sum.of.lognormals.R . d.sum.of.mixtures.EXPLN.R . d.sum.of.mixtures.LNLN.R . d.sum.of.mixtures.rLNLN.R . d.sum.of.types.LNLN.R . d.sum.of.types.rLNLN.R . draw.parameters.EXPLN.R . draw.parameters.LNLN.R . draw.parameters.rLNLN.R . generate.toydata.R . get.range.EXPLN.R . get.range.LNLN.R . get.range.rLNLN.R . lognormal.exp.convolution.R . mix.d.sum.of.mixtures.EXPLN.R . mix.d.sum.of.mixtures.LNLN.R . mix.d.sum.of.mixtures.rLNLN.R . penalty.constraint.EXPLN.R . penalty.constraint.LNLN.R . penalty.constraint.rLNLN.R . r.sum.of.mixtures.EXPLN.R . r.sum.of.mixtures.LNLN.R . r.sum.of.mixtures.rLNLN.R . set.model.functions.R . stochasticProfilingData.R . stochasticProfilingML.R . stochprof.expit.R . stochprof.logit.R . stochprof.loop.R . stochprof.results.EXPLN.R . stochprof.results.LNLN.R . stochprof.results.rLNLN.R . stochprof.search.EXPLN.R . stochprof.search.LNLN.R . stochprof.search.rLNLN.R . stochprofML-internal.R . transform.par.EXPLN.R . transform.par.LNLN.R . transform.par.rLNLN.R . Full stochprofML package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
EDOtrans
A data transformation method which takes into account the special property of scale non-invariance w ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jorn Lotsch (view profile)
donut
Finds the k nearest neighbours in a dataset of specified points,
adding the option to wrap certain ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Paul J. Northrop (view profile)
FSInteract
Performs fast detection of interactions in large-scale data using the
method of random intersection ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Rajen D. Shah (view profile)
CRANsearcher
One of the strengths of R is its vast package ecosystem. Indeed, R packages extend from visualizatio ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Agustin Calatroni (view profile)
telemac
An R interface to the TELEMAC suite for modelling
of free surface flow. This includes methods for m ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Tobias Pilz (view profile)