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staRdom  

PARAFAC Analysis of EEMs from DOM
View on CRAN: Click here


Download and install staRdom package within the R console
Install from CRAN:
install.packages("staRdom")

Install from Github:
library("remotes")
install_github("cran/staRdom")

Install by package version:
library("remotes")
install_version("staRdom", "1.1.28")



Attach the package and use:
library("staRdom")
Maintained by
Matthias Pucher
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-04-16
Latest Update: 2023-06-16
Description:
This is a user-friendly way to run a parallel factor (PARAFAC) analysis (Harshman, 1971) <doi:10.1121/1.1977523> on excitation emission matrix (EEM) data from dissolved organic matter (DOM) samples (Murphy et al., 2013) <doi:10.1039/c3ay41160e>. The analysis includes profound methods for model validation. Some additional functions allow the calculation of absorbance slope parameters and create beautiful plots.
How to cite:
Matthias Pucher (2018). staRdom: PARAFAC Analysis of EEMs from DOM. R package version 1.1.28, https://cran.r-project.org/web/packages/staRdom
Previous versions and publish date:
1.0.3 (2018-04-16 16:20), 1.0.5 (2018-05-02 17:14), 1.0.8 (2018-06-21 15:59), 1.0.12 (2019-02-13 17:20), 1.0.14 (2019-06-27 10:30), 1.0.18 (2019-08-30 16:10), 1.0.25 (2019-11-02 11:10), 1.1.0 (2019-11-19 12:40), 1.1.1 (2019-11-27 14:40), 1.1.3 (2020-01-28 12:20), 1.1.7 (2020-03-14 00:00), 1.1.10 (2020-04-02 13:30), 1.1.11 (2020-04-23 18:10), 1.1.14 (2020-07-29 01:40), 1.1.18 (2020-11-25 17:10), 1.1.21 (2021-04-20 13:00), 1.1.23 (2021-10-08 13:10), 1.1.25 (2022-03-21 16:50)
Other packages that cited staRdom R package
View staRdom citation profile
Other R packages that staRdom depends, imports, suggests or enhances
Functions, R codes and Examples using the staRdom R package
Some associated functions: A_missing . abs_blcor . abs_fit_slope . abs_parms . absorbance_read . as.data.frame.eem . dot-eem_csv . dot-trans_parafac . eem2array . eem_absdil . eem_apply . eem_checkdata . eem_checksize . eem_corrections . eem_csv . eem_csv2 . eem_dilcorr . eem_dilution . eem_duplicates . eem_easy . eem_eemdil . eem_exclude . eem_export . eem_extend2largest . eem_getextreme . eem_hitachi . eem_ife_correction . eem_import_dir . eem_interp . eem_is.na . eem_list . eem_list_outliers . eem_load_dreem . eem_matmult . eem_metatemplate . eem_name_replace . eem_overview_plot . eem_parafac . eem_raman_area . eem_raman_normalisation2 . eem_range . eem_read_csv . eem_red2smallest . eem_rem_scat . eem_scale_ext . eem_setNA . eem_smooth . eem_spectral_cor . eem_write_csv . eempf4analysis . eempf_OF_upload . eempf_bindxc . eempf_comp_load_plot . eempf_comp_mat . eempf_comp_names-set . eempf_comp_names . eempf_compare . eempf_comps3D . eempf_convergence . eempf_corcondia . eempf_corplot . eempf_cortable . eempf_eemqual . eempf_excomp . eempf_export . eempf_fits . eempf_leverage . eempf_leverage_data . eempf_leverage_ident . eempf_leverage_plot . eempf_load_plot . eempf_mleverage . eempf_openfluor . eempf_plot_comps . eempf_plot_ssccheck . eempf_reorder . eempf_report . eempf_rescaleBC . eempf_residuals . eempf_residuals_metrics . eempf_residuals_plot . eempf_ssc . eempf_ssccheck . eempf_varimp . ggeem . list_join . maxlines . norm2A . norm_array . parafac_conv . pf1 . pf1n . pf2 . pf3 . pf4 . sh . splithalf . splithalf_plot . splithalf_splits . splithalf_tcc . ssc . ssc_max . tcc . tcc_find_pairs . 
Some associated R codes: absorption_functions.R . correction_functions.R . data_check.R . data_doc.R . data_functions.R . eem_importers.R . globals.R . parafac_functions.R . parafac_plot_functions.R . plot_functions.R .  Full staRdom package functions and examples
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