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stIHC  

Spatial Transcriptomics Iterative Hierarchical Clustering
View on CRAN: Click here


Download and install stIHC package within the R console
Install from CRAN:
install.packages("stIHC")

Install from Github:
library("remotes")
install_github("cran/stIHC")

Install by package version:
library("remotes")
install_version("stIHC", "0.1.0")



Attach the package and use:
library("stIHC")
Maintained by
Catherine Higgins
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-01-12
Latest Update: 2026-01-12
Description:
Spatial transcriptomics iterative hierarchical clustering ('stIHC'), is a method for identifying spatial gene co-expression modules, defined as groups of genes with shared spatial expression patterns. The method is applicable across spatial transcriptomics technologies with differing spatial resolution, and provides a framework for investigating the spatial organisation of gene expression in tissues. For further details, see Higgins C., Li J.J., Carey M. <doi:10.1002/qub2.70011>.
How to cite:
Catherine Higgins (2026). stIHC: Spatial Transcriptomics Iterative Hierarchical Clustering. R package version 0.1.0, https://cran.r-project.org/web/packages/stIHC. Accessed 07 Aug. 2026.
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Complete documentation for stIHC
Functions, R codes and Examples using the stIHC R package
Full stIHC package functions and examples
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