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ssdGSA  

Single Sample Directional Gene Set Analysis
View on CRAN: Click here


Download and install ssdGSA package within the R console
Install from CRAN:
install.packages("ssdGSA")

Install from Github:
library("remotes")
install_github("cran/ssdGSA")

Install by package version:
library("remotes")
install_version("ssdGSA", "0.1.1")



Attach the package and use:
library("ssdGSA")
Maintained by
Xingpeng Li
[Scholar Profile | Author Map]
First Published: 2024-07-22
Latest Update: 2024-07-26
Description:
A method that inherits the standard gene set variation analysis (GSVA) method and also provides the option to use summary statistics from any analysis (disease vs healthy, lesional side vs nonlesional side, etc..) input to define the direction of gene sets used for directional gene set score calculation for a given disease. Note to use this package, GSVA(>= 1.52.1) is needed to pre-installed. Hanzelmann, S., Castelo, R., and Guinney, J. (2013) <doi:10.1186/1471-2105-14-7>.
How to cite:
Xingpeng Li (2024). ssdGSA: Single Sample Directional Gene Set Analysis. R package version 0.1.1, https://cran.r-project.org/web/packages/ssdGSA. Accessed 17 Feb. 2025.
Previous versions and publish date:
0.1.0 (2024-07-22 19:30)
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Complete documentation for ssdGSA
Functions, R codes and Examples using the ssdGSA R package
Full ssdGSA package functions and examples
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