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ss3sim  

Fisheries Stock Assessment Simulation Testing with Stock Synthesis
View on CRAN: Click here


Download and install ss3sim package within the R console
Install from CRAN:
install.packages("ss3sim")

Install from Github:
library("remotes")
install_github("cran/ss3sim")

Install by package version:
library("remotes")
install_version("ss3sim", "1.0.3")



Attach the package and use:
library("ss3sim")
Maintained by
Kelli F. Johnson
[Scholar Profile | Author Map]
First Published: 2014-01-22
Latest Update: 2019-11-08
Description:
Develops a framework for fisheries stock assessment simulation testing with Stock Synthesis (SS) as described in Anderson et al. (2014) <doi:10.1371/journal.pone.0092725>.
How to cite:
Kelli F. Johnson (2014). ss3sim: Fisheries Stock Assessment Simulation Testing with Stock Synthesis. R package version 1.0.3, https://cran.r-project.org/web/packages/ss3sim. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.8.0 (2014-01-22 21:04), 0.8.2 (2014-03-10 00:46), 0.9.0 (2015-12-24 08:19), 0.9.2 (2016-04-24 16:34), 0.9.3 (2016-11-30 13:13), 0.9.5 (2017-04-19 05:55)
Other packages that cited ss3sim R package
View ss3sim citation profile
Other R packages that ss3sim depends, imports, suggests or enhances
Complete documentation for ss3sim
Functions, R codes and Examples using the ss3sim R package
Some associated functions: add_CPUE . add_colnames . add_nulls . add_tv_parlines . calculate_data_units . calculate_re . case_comp . case_deparse . case_fishing . case_index . case_tv . change_data . change_e . change_e_fcast_yrs . change_em_binning . change_f . change_f_par . change_lcomp_constant . change_o . change_pop_bin . change_rec_devs . change_rec_devs_par . change_retro . change_tail_compression . change_tv . check_data . check_data_str_range . clean_data . cleanup_ss3 . copy_ss3models . create_argfiles . expand_scenarios . facet_form . fill_across . get_args . get_bin . get_bin_info . get_caseargs . get_caseval . get_fish600_casefolder . get_model_folder . get_nll_components . get_recdevs . get_results_all . get_results_derived . get_results_scalar . get_results_scenario . get_results_timeseries . get_sigmar . get_ss_ver_dl . get_ss_ver_file . id_scenarios . plot_scalar_boxplot . plot_scalar_points . plot_ts_boxplot . plot_ts_lines . plot_ts_points . profile_fmsy . remove_CPUE . remove_q_ctl . rename_ss3_files . run_ss3model . run_ss3sim . sample_agecomp . sample_calcomp . sample_comp . sample_index . sample_lcomp . sample_mlacomp . sample_wtatage . sanitize_admb_options . scalar_dat . setup_parallel . ss3sim . ss3sim_base . standardize_bounds . substr_r . ts_dat . vbgf_func . verify_input . verify_plot_arguments . 
Some associated R codes: add_colnames.R . add_nulls.R . calculate_re.R . case-write.R . change_lcomp_constant.R . change_o.R . change_q.R . change_tail_compression.R . get_bin.R . get_ss_version.R . growth_estimation.R . plot_functions.R . sample_agecomp.R . sample_calcomp.R . sample_comp.R . sample_lcomp.R . sample_mlacomp.R . sample_wtatage.R . standardize_bounds.R .  Full ss3sim package functions and examples
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