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spruce  

Spatial Random Effects Clustering of Single Cell Data
View on CRAN: Click here


Download and install spruce package within the R console
Install from CRAN:
install.packages("spruce")

Install from Github:
library("remotes")
install_github("cran/spruce")

Install by package version:
library("remotes")
install_version("spruce", "0.99.1")



Attach the package and use:
library("spruce")
Maintained by
Carter Allen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-02-21
Latest Update: 2022-12-05
Description:
Allows for identification of cell sub-populations within tissue samples usingBayesian multivariate mixture models with spatial random effects to account for a wide range ofspatial gene expression patterns as described in Allen et. al 2021 doi10.11012021.06.23.449615.Bayesian inference is conducted using efficient Gibbs sampling implemented using Rcpp.
How to cite:
Carter Allen (2022). spruce: Spatial Random Effects Clustering of Single Cell Data. R package version 0.99.1, https://cran.r-project.org/web/packages/spruce. Accessed 28 Mar. 2025.
Previous versions and publish date:
0.99.1 (2022-02-21 09:50)
Other packages that cited spruce R package
View spruce citation profile
Other R packages that spruce depends, imports, suggests or enhances
Functions, R codes and Examples using the spruce R package
Full spruce package functions and examples
Downloads during the last 30 days
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