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spider  

Species Identity and Evolution in R
View on CRAN: Click here


Download and install spider package within the R console
Install from CRAN:
install.packages("spider")

Install from Github:
library("remotes")
install_github("cran/spider")

Install by package version:
library("remotes")
install_version("spider", "1.5.0")



Attach the package and use:
library("spider")
Maintained by
Rupert A. Collins
[Scholar Profile | Author Map]
First Published: 2011-11-12
Latest Update: 2018-02-16
Description:
Analysis of species limits and DNA barcoding data. Included are functions for generating important summary statistics from DNA barcode data, assessing specimen identification efficacy, testing and optimizing divergence threshold limits, assessment of diagnostic nucleotides, and calculation of the probability of reciprocal monophyly. Additionally, a sliding window function offers opportunities to analyse information across a gene, often used for marker design in degraded DNA studies. Further information on the package has been published in Brown et al (2012) <doi:10.1111/j.1755-0998.2011.03108.x>.
How to cite:
Rupert A. Collins (2011). spider: Species Identity and Evolution in R. R package version 1.5.0, https://cran.r-project.org/web/packages/spider. Accessed 21 Apr. 2025.
Previous versions and publish date:
1.1-0 (2011-11-12 17:15), 1.1-1 (2011-12-27 11:06), 1.1-2 (2012-03-14 07:26), 1.1-3 (2012-04-23 07:13), 1.1-5 (2012-11-15 14:12), 1.2-0 (2012-12-25 15:41), 1.3-0 (2013-12-27 07:30)
Other packages that cited spider R package
View spider citation profile
Other R packages that spider depends, imports, suggests or enhances
Complete documentation for spider
Functions, R codes and Examples using the spider R package
Some associated functions: anoteropsis . bestCloseMatch . blockAlignment . cgraph . chaoHaplo . checkDNA . dataStat . dolomedes . haploAccum . heatmapSpp . is.ambig . localMinima . maxInDist . minInDist . monophyly . monophylyBoot . nearNeighbour . nonConDist . nucDiag . ordinDNA . paa . plot.haploAccum . plot.ordinDNA . plot.slidWin . polyBalance . rankSlidWin . read.BOLD . read.GB . rmSingletons . rnucDiag . rosenberg . salticidae . sarkar . search.BOLD . seeBarcode . seqStat . slideAnalyses . slideBoxplots . slideNucDiag . slidingWindow . spider-package . sppDist . sppDistMatrix . sppVector . stats.BOLD . tajima.K . tclust . threshID . threshOpt . tiporder . titv . tree.comp . woodmouse . 
Some associated R codes: bestCloseMatch.R . blockAlignment.R . cgraph.R . chaoHaplo.R . checkDNA.R . dataStat.R . haploAccum.R . heatmapSpp.R . is.ambig.R . localMinima.R . maxInDist.R . minInDist.R . monophyly.R . monophylyBoot.R . nearNeighbour.R . nonConDist.R . nucDiag.R . ordinDNA.R . paa.R . plot.haploAccum.R . plot.ordinDNA.R . plot.slidWin.R . polyBalance.R . rankSlidWin.R . read.BOLD.R . read.GB.R . rmSingletons.R . rnucDiag.R . rosenberg.R . search.BOLD.R . seeBarcode.R . seqStat.R . slideAnalyses.R . slideBoxplots.R . slideNucDiag.R . slidingWindow.R . spider-package.R . sppDist.R . sppDistMatrix.R . stats.BOLD.R . tajima.K.R . tclust.R . threshID.R . threshOpt.R . tiporder.R . titv.R . tree.comp.R .  Full spider package functions and examples
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