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spgs  

Statistical Patterns in Genomic Sequences
View on CRAN: Click here


Download and install spgs package within the R console
Install from CRAN:
install.packages("spgs")

Install from Github:
library("remotes")
install_github("cran/spgs")

Install by package version:
library("remotes")
install_version("spgs", "1.0-4")



Attach the package and use:
library("spgs")
Maintained by
Andrew Hart
[Scholar Profile | Author Map]
First Published: 2015-03-28
Latest Update: 2023-10-03
Description:
A collection of statistical hypothesis tests and other techniques for identifying certain spatial relationships/phenomena in DNA sequences. In particular, it provides tests and graphical methods for determining whether or not DNA sequences comply with Chargaff's second parity rule or exhibit purine-pyrimidine parity. In addition, there are functions for efficiently simulating discrete state space Markov chains and testing arbitrary symbolic sequences of symbols for the presence of first-order Markovianness. Also, it has functions for counting words/k-mers (and cylinder patterns) in arbitrary symbolic sequences. Functions which take a DNA sequence as input can handle sequences stored as SeqFastadna objects from the 'seqinr' package.
How to cite:
Andrew Hart (2015). spgs: Statistical Patterns in Genomic Sequences. R package version 1.0-4, https://cran.r-project.org/web/packages/spgs. Accessed 22 Apr. 2025.
Previous versions and publish date:
1.0-1 (2017-07-21 10:59), 1.0-2 (2018-05-16 19:30), 1.0-3 (2019-12-06 20:20), 1.0 (2015-03-28 07:40)
Other packages that cited spgs R package
View spgs citation profile
Other R packages that spgs depends, imports, suggests or enhances
Complete documentation for spgs
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