Other packages > Find by keyword >

spgs  

Statistical Patterns in Genomic Sequences
View on CRAN: Click here


Download and install spgs package within the R console
Install from CRAN:
install.packages("spgs")

Install from Github:
library("remotes")
install_github("cran/spgs")

Install by package version:
library("remotes")
install_version("spgs", "1.0-4")



Attach the package and use:
library("spgs")
Maintained by
Andrew Hart
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-03-28
Latest Update: 2023-10-03
Description:
A collection of statistical hypothesis tests and other techniques for identifying certain spatial relationships/phenomena in DNA sequences. In particular, it provides tests and graphical methods for determining whether or not DNA sequences comply with Chargaff's second parity rule or exhibit purine-pyrimidine parity. In addition, there are functions for efficiently simulating discrete state space Markov chains and testing arbitrary symbolic sequences of symbols for the presence of first-order Markovianness. Also, it has functions for counting words/k-mers (and cylinder patterns) in arbitrary symbolic sequences. Functions which take a DNA sequence as input can handle sequences stored as SeqFastadna objects from the 'seqinr' package.
How to cite:
Andrew Hart (2015). spgs: Statistical Patterns in Genomic Sequences. R package version 1.0-4, https://cran.r-project.org/web/packages/spgs. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0-1 (2017-07-21 10:59), 1.0-2 (2018-05-16 19:30), 1.0-3 (2019-12-06 20:20), 1.0 (2015-03-28 07:40)
Other packages that cited spgs R package
View spgs citation profile
Other R packages that spgs depends, imports, suggests or enhances
Complete documentation for spgs
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  
pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA