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spatsurv  

Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models
View on CRAN: Click here


Download and install spatsurv package within the R console
Install from CRAN:
install.packages("spatsurv")

Install from Github:
library("remotes")
install_github("cran/spatsurv")

Install by package version:
library("remotes")
install_version("spatsurv", "2.0-1")



Attach the package and use:
library("spatsurv")
Maintained by
Benjamin M. Taylor
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-01-14
Latest Update: 2023-10-19
Description:
Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models. See Benjamin M. Taylor, Barry S. Rowlingson (2017) <doi:10.18637/jss.v077.i04>.
How to cite:
Benjamin M. Taylor (2014). spatsurv: Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models. R package version 2.0-1, https://cran.r-project.org/web/packages/spatsurv. Accessed 03 Jul. 2026.
Previous versions and publish date:
0.9-1 (2014-03-27 15:39), 0.9-2 (2014-05-13 10:37), 0.9-3 (2014-06-16 11:40), 0.9-5 (2014-06-25 12:32), 0.9-6 (2014-07-15 10:31), 0.9-7 (2014-09-12 11:39), 0.9-8 (2014-11-13 14:53), 0.9-9 (2015-06-03 19:03), 0.9-10 (2015-07-10 20:41), 0.9-11 (2015-10-21 11:53), 0.9-12 (2016-06-29 20:47), 0.9-14 (2016-10-24 17:14), 0.9 (2014-01-14 19:52), 1.0 (2017-03-07 13:41), 1.1 (2017-03-23 14:45), 1.2 (2018-05-22 14:14), 1.4 (2020-03-05 11:20), 1.5 (2020-04-26 09:00), 1.6 (2021-03-31 18:30), 1.7 (2022-03-02 15:50), 1.8-2 (2022-11-22 15:30), 1.8 (2022-05-06 11:00), 2.0 (2023-10-02 15:40)
Other packages that cited spatsurv R package
View spatsurv citation profile
Other R packages that spatsurv depends, imports, suggests or enhances
Complete documentation for spatsurv
Functions, R codes and Examples using the spatsurv R package
Some associated functions: B . Bspline.construct . BsplineHaz . CSplot . Et_PP . EvalCov . ExponentialCovFct . FFTgrid . GammaFromY_SPDE . GammafromY . Independent . MCE . NonSpatialLogLikelihood_or_gradient . PsplineHaz . QuadApprox . SPDE . SPDEprec . SpikedExponentialCovFct . Summarise . TwoWayHazAdditive . YFromGamma_SPDE . YfromGamma . allocate . alpha . baseHazST . basehazard.basehazardspec . basehazard . baselinehazard . baselinehazard_multiWay . betapriorGauss . blockDiag . boxplotRisk . checkSurvivalData . circulant.matrix . circulant.numeric . circulant . circulantij . covmodel . cumbasehazard.basehazardspec . cumbasehazard . cumulativeBspline.construct . density_PP . densityquantile.basehazardspec . densityquantile . densityquantile_PP . derivindepGaussianprior . derivindepGaussianpriorST . derivpsplineprior . distinfo.basehazardspec . distinfo . dot-onAttach . estimateY . etapriorGauss . exponentialHaz . fixParHaz . fixedpars . fixmatrix . frailtylag1 . fs . fstimes . gamma2risk . gencens . getBbasis . getGrid . getOptCellwidth . getbb . getcov . getgrd . getleneta . getparranges . getsurvdata . gompertzHaz . gradbasehazard.basehazardspec . gradbasehazard . gradcumbasehazard.basehazardspec . gradcumbasehazard . grid2spdf . grid2spix . grid2spts . gridY . gridY_polygonal . guess_t . hasNext.iter . hasNext . hazard_PP . hazardexceedance . hazardpars . hessbasehazard.basehazardspec . hessbasehazard . hesscumbasehazard.basehazardspec . hesscumbasehazard . imputationModel . indepGaussianprior . indepGaussianpriorST . inference.control . insert . invtransformweibull . is.burnin . is.retain . iteration . logPosterior . logPosterior_SPDE . logPosterior_gridded . logPosterior_polygonal . loop.mcmc . makehamHaz . maxlikparamPHsurv . mcmcLoop . mcmcPriors . mcmcProgressNone . mcmcProgressPrint . mcmcProgressTextBar . mcmcpars . midpts . multiWayHaz . neighLocs . neighOrder . nextStep . omegapriorGauss . omegapriorGaussST . optifix . plot.FFTgrid . plotsurv . polyadd . polymult . posteriorcov . predict.mcmcspatsurv . print.mcmc . print.mcmcspatsurv . print.mlspatsurv . print.textSummary . priorposterior . proposalVariance . proposalVariance_SPDE . proposalVariance_gridded . proposalVariance_polygonal . psplineRWprior . psplineprior . quantile.mcmcspatsurv . quantile.mlspatsurv . randompars . reconstruct.bs.coxph . reconstruct.bs.mcmcspatsurv . reconstruct.bs . resetLoop . residuals.mcmcspatsurv . rootWeibullHaz . setTxtProgressBar2 . setupHazard . setupPrecMatStruct . showGrid . simsurv . spatialpars . spatsurv-package . spatsurvVignette . summary.mcmc . summary.mcmcspatsurv . surv3d . survival_PP . survspat . survspatNS . textSummary . timevaryingPL . tpowHaz . transformweibull . txtProgressBar2 . vcov.mcmcspatsurv . vcov.mlspatsurv . weibullHaz . 
Some associated R codes: BsplineHaz.R . GMRF.R . PsplineHaz.R . RWprior.R . TPSHaz.R . baseHazST.R . baseHazST_prior.R . basehazardspec.R . calibratemcmc.R . circulant.R . covarianceFunctions.R . exponential.R . gompertz.R . log_posteriors_and_derivatives.R . log_posteriors_and_derivatives_SPDE.R . log_posteriors_and_derivatives_gridded.R . log_posteriors_and_derivatives_polygonal.R . makeham.R . maplayers.R . mcmcIterator.R . mcmcPriors.R . mcmcProgress.R . multiWayHaz.R . multiWayHazAdditive.R . nonspatial_log_likelihood_and_derivatives.R . optifix.R . outputSummary.R . partial_likelihood.R . plot_baseline_hazard_multiway.R . plottingfunctions.R . postprocessing.R . rootweibull.R . spatgrid.R . spatial_imputation.R . spatsurv.R . spatsurvMisc.R . splineFunctions.R . surv3d.R . survsim.R . survspat.R . survspatNS.R . tpow.R . txtProgressBar2.R . weibull.R . zzz.R .  Full spatsurv package functions and examples
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