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spatialGE  

Visualization and Analysis of Spatial Heterogeneity in Spatially-Resolved Gene Expression
View on CRAN: Click here


Download and install spatialGE package within the R console
Install from CRAN:
install.packages("spatialGE")

Install from Github:
library("remotes")
install_github("cran/spatialGE")

Install by package version:
library("remotes")
install_version("spatialGE", "1.2.2")



Attach the package and use:
library("spatialGE")
Maintained by
Oscar Ospina
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-05-13
Latest Update: 2025-06-04
Description:
Visualization and analysis of spatially resolved transcriptomics data. The 'spatialGE' R package provides methods for visualizing and analyzing spatially resolved transcriptomics data, such as 10X Visium, CosMx, or csv/tsv gene expression matrices. It includes tools for spatial interpolation, autocorrelation analysis, tissue domain detection, gene set enrichment, and differential expression analysis using spatial mixed models.
How to cite:
Oscar Ospina (2025). spatialGE: Visualization and Analysis of Spatial Heterogeneity in Spatially-Resolved Gene Expression. R package version 1.2.2, https://cran.r-project.org/web/packages/spatialGE. Accessed 24 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:07), 1.2.0 (2025-05-13 10:50), 1.2.1 (2025-05-26 18:40)
Other packages that cited spatialGE R package
View spatialGE citation profile
Other R packages that spatialGE depends, imports, suggests or enhances
Complete documentation for spatialGE
Functions, R codes and Examples using the spatialGE R package
Full spatialGE package functions and examples
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