Other packages > Find by keyword >

spate  

Spatio-Temporal Modeling of Large Data Using a Spectral SPDE Approach
View on CRAN: Click here


Download and install spate package within the R console
Install from CRAN:
install.packages("spate")

Install from Github:
library("remotes")
install_github("cran/spate")

Install by package version:
library("remotes")
install_version("spate", "1.7.5")



Attach the package and use:
library("spate")
Maintained by
Fabio Sigrist
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-11-29
Latest Update: 2023-10-03
Description:
Functionality for spatio-temporal modeling of large data sets is provided. A Gaussian process in space and time is defined through a stochastic partial differential equation (SPDE). The SPDE is solved in the spectral space, and after discretizing in time and space, a linear Gaussian state space model is obtained. When doing inference, the main computational difficulty consists in evaluating the likelihood and in sampling from the full conditional of the spectral coefficients, or equivalently, the latent space-time process. In comparison to the traditional approach of using a spatio-temporal covariance function, the spectral SPDE approach is computationally advantageous. See Sigrist, Kuensch, and Stahel (2015) <doi:10.1111/rssb.12061> for more information on the methodology. This package aims at providing tools for two different modeling approaches. First, the SPDE based spatio-temporal model can be used as a component in a customized hierarchical Bayesian model (HBM). The functions of the package then provide parameterizations of the process part of the model as well as computationally efficient algorithms needed for doing inference with the HBM. Alternatively, the adaptive MCMC algorithm implemented in the package can be used as an algorithm for doing inference without any additional modeling. The MCMC algorithm supports data that follow a Gaussian or a censored distribution with point mass at zero. Covariates can be included in the model through a regression term.
How to cite:
Fabio Sigrist (2012). spate: Spatio-Temporal Modeling of Large Data Using a Spectral SPDE Approach. R package version 1.7.5, https://cran.r-project.org/web/packages/spate. Accessed 17 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:07), 1.0 (2012-11-29 19:26), 1.1 (2013-01-11 14:27), 1.2 (2013-05-09 19:13), 1.3 (2013-12-29 07:36), 1.4 (2015-01-25 21:30), 1.5 (2016-08-29 19:29), 1.6 (2019-09-24 12:10), 1.7.3 (2022-10-21 16:40), 1.7.4 (2022-11-02 09:42), 1.7 (2020-01-07 11:50)
Other packages that cited spate R package
View spate citation profile
Other R packages that spate depends, imports, suggests or enhances
Complete documentation for spate
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
rt.test  
Robustified t-Test
Performs one-sample t-test based on robustified statistics using median/MAD (TA) and Hodges-Lehmann/ ...
Download / Learn more Package Citations See dependency  
alabama  
Constrained Nonlinear Optimization
Augmented Lagrangian Adaptive Barrier Minimization Algorithm for optimizing smooth nonlinear object ...
Download / Learn more Package Citations See dependency  
VFS  
Vegetated Filter Strip and Erosion Model
Empirical models for runoff, erosion, and phosphorus loss across a vegetated filter strip, given sl ...
Download / Learn more Package Citations See dependency  
FastKNN  
Fast k-Nearest Neighbors
Compute labels for a test set according to the k-Nearest Neighbors classification. This is a fast wa ...
Download / Learn more Package Citations See dependency  
VEwaningVariant  
Vaccine Efficacy Over Time - Variant Aware
Implements methods for inference on potential waning of vaccine efficacy and for estimation of vacci ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA