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spatPomp  

Inference for Spatiotemporal Partially Observed Markov Processes
View on CRAN: Click here


Download and install spatPomp package within the R console
Install from CRAN:
install.packages("spatPomp")

Install from Github:
library("remotes")
install_github("cran/spatPomp")

Install by package version:
library("remotes")
install_version("spatPomp", "1.1.0")



Attach the package and use:
library("spatPomp")
Maintained by
Edward Ionides
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-12
Latest Update: 2024-11-14
Description:
Inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models. The 'spatPomp' package extends 'pomp' to include algorithms taking advantage of the spatial structure in order to assist with handling high dimensional processes. See Asfaw et al. (2023) <doi:10.48550/arXiv.2101.01157> for further description of the package.
How to cite:
Edward Ionides (2021). spatPomp: Inference for Spatiotemporal Partially Observed Markov Processes. R package version 1.1.0, https://cran.r-project.org/web/packages/spatPomp. Accessed 05 Mar. 2026.
Previous versions and publish date:
0.21.0.0 (2021-04-12 10:40), 0.23.0.0 (2021-07-09 10:00), 0.25.0.0 (2021-07-28 00:20), 0.28.0.0 (2021-09-05 02:30), 0.29.0.0 (2022-01-15 17:30), 0.30.0.1 (2022-09-06 23:00), 0.30.2.0 (2022-12-24 20:50), 0.31.0.0 (2023-01-16 21:10), 0.32.0 (2023-05-18 23:10), 0.33.0 (2023-08-09 22:40), 0.34.0 (2023-12-03 21:40), 0.34.2 (2024-02-18 16:50), 0.35.0 (2024-05-31 00:00), 0.36.1 (2024-08-20 23:20), 1.0.0 (2024-11-14 21:40)
Other packages that cited spatPomp R package
View spatPomp citation profile
Other R packages that spatPomp depends, imports, suggests or enhances
Complete documentation for spatPomp
Functions, R codes and Examples using the spatPomp R package
Some associated functions: abf . abfir . arma_benchmark . as_data_frame . bm . bm2 . bm2_kalman_logLik . bm_kalman_logLik . bpfilter . city_data_UK . conc . concat . dunit_measure . enkf . eunit_measure . gbm . girf . he10 . he10coordinates . he10demography . he10measles . he10mle . ibpf . ienkf . igirf . iubf . listie . loglik . lorenz . measles . measles2 . measlesUK . munit_measure . pStop . param_formats . plot . print . reexports . runit_measure . simulate . spatPomp-class . spatPomp-package . spatPomp . spatPomp_Csnippet . undefined . unit_names . vec_dmeasure . vec_rmeasure . vunit_measure . 
Some associated R codes: abf.R . abfir.R . arma_benchmark.R . as_data_frame.R . bm.R . bm2.R . bm2_kalman_logLik.R . bm_kalman_logLik.R . bpfilter.R . city_data_UK.R . conc.R . concat.R . dunit_measure.R . enkf.R . eunit_measure.R . gbm.R . get_covariate_names.R . girf.R . he10.R . he10coordinates.R . he10demography.R . he10measles.R . he10mle.R . ibpf.R . ienkf.R . igirf.R . iter_filter.R . iubf.R . listie.R . loglik.R . lorenz.R . measles.R . measles2.R . measlesUK.R . munit_measure.R . package.R . param_formats.R . pipe.R . plot.R . print.R . pstop.R . runit_measure.R . safecall.R . simulate.R . spatPomp.R . spatPomp_Csnippet.R . spatPomp_class.R . spatPomp_workhorses.R . undefined.R . unit_names.R . vec_dmeasure.R . vec_rmeasure.R . vunit_measure.R .  Full spatPomp package functions and examples
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