Other packages > Find by keyword >

slfm  

Fitting a Bayesian Sparse Latent Factor Model in Gene Expression Analysis
View on CRAN: Click here


Download and install slfm package within the R console
Install from CRAN:
install.packages("slfm")

Install from Github:
library("remotes")
install_github("cran/slfm")

Install by package version:
library("remotes")
install_version("slfm", "1.0.2")



Attach the package and use:
library("slfm")
Maintained by
Vinicius Mayrink
[Scholar Profile | Author Map]
First Published: 2014-05-08
Latest Update: 2020-03-15
Description:
Set of tools to find coherent patterns in gene expression (microarray) data using a Bayesian Sparse Latent Factor Model (SLFM) <doi:10.1007/978-3-319-12454-4_15>. Considerable effort has been put to build a fast and memory efficient package, which makes this proposal an interesting and computationally convenient alternative to study patterns of gene expressions exhibited in matrices. The package contains the implementation of two versions of the model based on different mixture priors for the loadings: one relies on a degenerate component at zero and the other uses a small variance normal distribution for the spike part of the mixture.
How to cite:
Vinicius Mayrink (2014). slfm: Fitting a Bayesian Sparse Latent Factor Model in Gene Expression Analysis. R package version 1.0.2, https://cran.r-project.org/web/packages/slfm. Accessed 21 Apr. 2025.
Previous versions and publish date:
0.1 (2014-05-08 15:00), 0.2.0 (2015-07-29 06:21), 0.2.1 (2015-08-08 17:41), 0.2.2 (2015-08-10 09:10), 0.2.3 (2019-05-27 14:50), 1.0.0 (2019-07-28 01:00), 1.0.1 (2020-03-15 23:20)
Other packages that cited slfm R package
View slfm citation profile
Other R packages that slfm depends, imports, suggests or enhances
Complete documentation for slfm
Functions, R codes and Examples using the slfm R package
Some associated functions: plot_matrix . print.slfm . process_matrix . slfm . slfm_list . slfm_package . 
Some associated R codes: RcppExports.R .  Full slfm package functions and examples
Downloads during the last 30 days
03/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/20Downloads for slfm02468101214161820TrendBars

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
bssn  
Birnbaum-Saunders Model
It provides the density, distribution function, quantile function, random number generator, reliabil ...
Download / Learn more Package Citations See dependency  
HellCor  
The Hellinger Correlation
Empirical value of the Hellinger correlation, a measure of dependence between two continuous random ...
Download / Learn more Package Citations See dependency  
bigsparser  
Sparse Matrix Format with Data on Disk
Provide a sparse matrix format with data stored on disk, to be used in both R and C++. This is inte ...
Download / Learn more Package Citations See dependency  
discretecdAlgorithm  
Coordinate-Descent Algorithm for Learning Sparse Discrete Bayesian Networks
Structure learning of Bayesian network using coordinate-descent algorithm. This algorithm is design ...
Download / Learn more Package Citations See dependency  

24,098

R Packages

207,311

Dependencies

65,069

Author Associations

24,099

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA