Other packages > Find by keyword >

simule  

A Constrained L1 Minimization Approach for Estimating Multiple Sparse Gaussian or Nonparanormal Graphical Models
View on CRAN: Click here


Download and install simule package within the R console
Install from CRAN:
install.packages("simule")

Install from Github:
library("remotes")
install_github("cran/simule")

Install by package version:
library("remotes")
install_version("simule", "1.3.0")



Attach the package and use:
library("simule")
Maintained by
Beilun Wang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-04-19
Latest Update: 2018-07-02
Description:
This is an R implementation of a constrained l1 minimization approach for estimating multiple Sparse Gaussian or Nonparanormal Graphical Models (SIMULE). The SIMULE algorithm can be used to estimate multiple related precision matrices. For instance, it can identify context-specific gene networks from multi-context gene expression datasets. By performing data-driven network inference from high-dimensional and heterogenous data sets, this tool can help users effectively translate aggregated data into knowledge that take the form of graphs among entities. Please run demo(simuleDemo) to learn the basic functions provided by this package. For further details, please read the original paper: Beilun Wang, Ritambhara Singh, Yanjun Qi (2017) <doi:10.1007/s10994-017-5635-7>.
How to cite:
Beilun Wang (2017). simule: A Constrained L1 Minimization Approach for Estimating Multiple Sparse Gaussian or Nonparanormal Graphical Models. R package version 1.3.0, https://cran.r-project.org/web/packages/simule
Previous versions and publish date:
1.0.0 (2017-04-19 17:49), 1.1.0 (2017-05-25 09:55), 1.1.1 (2017-07-12 21:15), 1.1.2 (2017-07-31 23:47), 1.2.0 (2017-11-01 07:29)
Other packages that cited simule R package
View simule citation profile
Other R packages that simule depends, imports, suggests or enhances
Functions, R codes and Examples using the simule R package
Some associated functions: cancer . exampleData . exampleDataGraph . nip_37_data . plot.simule . returngraph . simule-package . simule . wsimule . 
Some associated R codes: Data.R . Plot.R . SIMULE.R . wSIMULE.R .  Full simule package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

multiocc  
Fits Multivariate Spatio-Temporal Occupancy Model
Spatio-temporal multivariate occupancy models can handle multiple species in occupancy models. This ...
Download / Learn more Package Citations See dependency  
ismev  
An Introduction to Statistical Modeling of Extreme Values
Functions to support the computations carried out in `An Introduction to Statistical Modeling of Ex ...
Download / Learn more Package Citations See dependency  
stagePop  
Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time
Provides facilities to implement and run population models of stage-structured species... ...
Download / Learn more Package Citations See dependency  
gclus  
Clustering Graphics
Orders panels in scatterplot matrices and parallel coordinate displays by some merit index. Package ...
Download / Learn more Package Citations See dependency  
MatrixEQTL  
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for associat ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns