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simplePHENOTYPES  

Simulation of Pleiotropic, Linked and Epistatic Phenotypes
View on CRAN: Click here


Download and install simplePHENOTYPES package within the R console
Install from CRAN:
install.packages("simplePHENOTYPES")

Install from Github:
library("remotes")
install_github("cran/simplePHENOTYPES")

Install by package version:
library("remotes")
install_version("simplePHENOTYPES", "1.3.0")



Attach the package and use:
library("simplePHENOTYPES")
Maintained by
Samuel Fernandes
[Scholar Profile | Author Map]
First Published: 2019-12-04
Latest Update: 2021-01-20
Description:
The number of studies involving correlated traits and the availability of tools to handle this type of data has increased considerably in the last decade. With such a demand, we need tools for testing hypotheses related to single and multi-trait (correlated) phenotypes based on many genetic settings. Thus, we implemented various options for simulation of pleiotropy and Linkage Disequilibrium under additive, dominance and epistatic models. The simulation currently takes a marker data set as an input and then uses it for simulating multiple traits as described in Fernandes and Lipka (2020) <doi:10.1186/s12859-020-03804-y>.
How to cite:
Samuel Fernandes (2019). simplePHENOTYPES: Simulation of Pleiotropic, Linked and Epistatic Phenotypes. R package version 1.3.0, https://cran.r-project.org/web/packages/simplePHENOTYPES. Accessed 23 Apr. 2025.
Previous versions and publish date:
1.0.5 (2019-12-04 11:40), 1.2.4 (2020-05-06 14:50)
Other packages that cited simplePHENOTYPES R package
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Complete documentation for simplePHENOTYPES
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