Other packages > Find by keyword >

simplePHENOTYPES  

Simulation of Pleiotropic, Linked and Epistatic Phenotypes
View on CRAN: Click here


Download and install simplePHENOTYPES package within the R console
Install from CRAN:
install.packages("simplePHENOTYPES")

Install from Github:
library("remotes")
install_github("cran/simplePHENOTYPES")

Install by package version:
library("remotes")
install_version("simplePHENOTYPES", "1.3.0")



Attach the package and use:
library("simplePHENOTYPES")
Maintained by
Samuel Fernandes
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-12-04
Latest Update: 2021-01-20
Description:
The number of studies involving correlated traits and the availability of tools to handle this type of data has increased considerably in the last decade. With such a demand, we need tools for testing hypotheses related to single and multi-trait (correlated) phenotypes based on many genetic settings. Thus, we implemented various options for simulation of pleiotropy and Linkage Disequilibrium under additive, dominance and epistatic models. The simulation currently takes a marker data set as an input and then uses it for simulating multiple traits as described in Fernandes and Lipka (2020) <doi:10.1186/s12859-020-03804-y>.
How to cite:
Samuel Fernandes (2019). simplePHENOTYPES: Simulation of Pleiotropic, Linked and Epistatic Phenotypes. R package version 1.3.0, https://cran.r-project.org/web/packages/simplePHENOTYPES. Accessed 06 Mar. 2026.
Previous versions and publish date:
1.0.5 (2019-12-04 11:40), 1.2.4 (2020-05-06 14:50)
Other packages that cited simplePHENOTYPES R package
View simplePHENOTYPES citation profile
Other R packages that simplePHENOTYPES depends, imports, suggests or enhances
Complete documentation for simplePHENOTYPES
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA