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simplePHENOTYPES
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Download and install simplePHENOTYPES package within the R console
Install from CRAN:
install.packages("simplePHENOTYPES")
Install from Github:
library("remotes")
install_github("cran/simplePHENOTYPES")
Install by package version:
library("remotes")
install_version("simplePHENOTYPES", "1.3.0")
Attach the package and use:
library("simplePHENOTYPES")
Maintained by
Samuel Fernandes
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[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.simplePHENOTYPES . https://github.com/samuelbfernandes/simplePHENOTYPES/issues . https://github.com/samuelbfernandes/simplePHENOTYPES . simplePHENOTYPES citation info . simplePHENOTYPES results . simplePHENOTYPES.pdf . Introduction to simplePHENOTYPES . simplePHENOTYPES_1.3.0.tar.gz . simplePHENOTYPES_1.3.0.zip . simplePHENOTYPES_1.3.0.zip . simplePHENOTYPES_1.3.0.zip . simplePHENOTYPES_1.3.0.tgz . simplePHENOTYPES_1.3.0.tgz . simplePHENOTYPES_1.3.0.tgz . simplePHENOTYPES_1.3.0.tgz . simplePHENOTYPES archive . https://CRAN.R-project.org/package=simplePHENOTYPES .
First Published: 2019-12-04
Latest Update: 2021-01-20
Description:
The number of studies involving correlated traits and the availability of tools to handle this type of data has increased considerably in the last decade. With such a demand, we need tools for testing hypotheses related to single and multi-trait (correlated) phenotypes based on many genetic settings. Thus, we implemented various options for simulation of pleiotropy and Linkage Disequilibrium under additive, dominance and epistatic models. The simulation currently takes a marker data set as an input and then uses it for simulating multiple traits as described in Fernandes and Lipka (2020) <doi:10.1186/s12859-020-03804-y>.
How to cite:
Samuel Fernandes (2019). simplePHENOTYPES: Simulation of Pleiotropic, Linked and Epistatic Phenotypes. R package version 1.3.0, https://cran.r-project.org/web/packages/simplePHENOTYPES. Accessed 23 Apr. 2025.
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Complete documentation for simplePHENOTYPES
Functions, R codes and Examples using
the simplePHENOTYPES R package
Some associated functions: SNP55K_maize282_maf04 . base_line_multi_traits . base_line_single_trait . constraint . create_phenotypes . file_loader . genetic_effect . genotypes . make_pd . numericalization . phenotypes . qtn_from_user . qtn_linkage . qtn_partially_pleiotropic . qtn_pleiotropic .
Some associated R codes: base_line_multi_traits.R . base_line_single_trait.R . constraint.R . create_phenotypes.R . data.R . file_loader.R . genetic_effect.R . genotypes.R . make_pd.R . numericalization.R . phenotypes.R . qtn_from_user.R . qtn_linkage.R . qtn_partially_pleiotropic.R . qtn_pleiotropic.R . zzz.R . Full simplePHENOTYPES package functions and examples
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