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simmr
View on CRAN: Click
here
Download and install simmr package within the R console
Install from CRAN:
install.packages("simmr")
Install from Github:
library("remotes")
install_github("cran/simmr")
Install by package version:
library("remotes")
install_version("simmr", "0.5.1.216")
Attach the package and use:
library("simmr")
Maintained by
Emma Govan
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-08-06
Latest Update: 2023-06-16
Description:
Fits Stable Isotope Mixing Models (SIMMs) and is meant as a longer term replacement to the previous widely-used package SIAR. SIMMs are used to infer dietary proportions of organisms consuming various food sources from observations on the stable isotope values taken from the organisms' tissue samples. However SIMMs can also be used in other scenarios, such as in sediment mixing or the composition of fatty acids. The main functions are simmr_load() and simmr_mcmc(). The two vignettes contain a quick start and a full listing of all the features. The methods used are detailed in the papers Parnell et al 2010 <doi:10.1371/journal.pone.0009672>, and Parnell et al 2013 <doi:10.1002/env.2221>.
How to cite:
Emma Govan (2015). simmr: A Stable Isotope Mixing Model. R package version 0.5.1.216, https://cran.r-project.org/web/packages/simmr
Previous versions and publish date:
0.1 (2015-08-06 21:53), 0.2 (2015-08-17 15:24), 0.3 (2016-01-19 11:57), 0.4.0 (2019-06-15 00:13), 0.4.1 (2019-07-03 20:20), 0.4.2 (2020-06-11 22:10), 0.4.4 (2021-01-20 15:30), 0.4.5 (2021-02-27 15:00), 0.5.0 (2023-03-26 01:00), 0.5.1.100 (2023-06-09 17:40), 0.5.1.212 (2023-06-16 17:00), 0.5.1.213 (2023-09-15 17:42), 0.5.1.214 (2023-10-02 18:30), 0.5.1.215 (2023-10-13 17:00)
Other packages that cited simmr R package
View simmr citation profile
Other R packages that simmr depends,
imports, suggests or enhances
Functions, R codes and Examples using
the simmr R package
Some associated functions: combine_sources . compare_groups . compare_sources . geese_data . geese_data_day1 . plot.simmr_input . plot.simmr_output . posterior_predictive . print.simmr_input . print.simmr_output . prior_viz . simmr . simmr_data_1 . simmr_data_2 . simmr_elicit . simmr_ffvb . simmr_load . simmr_mcmc . square_data . summary.simmr_output .
Some associated R codes: RcppExports.R . combine_sources.R . compare_groups.R . compare_sources.R . data.R . globals.R . plot.simmr_input.R . plot.simmr_output.R . posterior_predictive.simmr_output.R . print.simmr_input.R . print.simmr_output.R . prior_viz.simmr_output.R . simmr-package.R . simmr.R . simmr_elicit.R . simmr_ffvb.R . simmr_load.R . simmr_mcmc.R . summary.simmr_output.R . Full simmr package functions and examples
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