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simPATHy  

A Method for Simulating Data from Perturbed Biological Pathways
View on CRAN: Click here


Download and install simPATHy package within the R console
Install from CRAN:
install.packages("simPATHy")

Install from Github:
library("remotes")
install_github("cran/simPATHy")

Install by package version:
library("remotes")
install_version("simPATHy", "0.6")



Attach the package and use:
library("simPATHy")
Maintained by
Elisa Salviato
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-07-18
Latest Update: 2021-11-23
Description:
Simulate data from a Gaussian graphical model or a Gaussian Bayesian network in two conditions. Given a covariance matrix of a reference condition simulate plausible disregulations. See Salviato et al. (2017) .
How to cite:
Elisa Salviato (2016). simPATHy: A Method for Simulating Data from Perturbed Biological Pathways. R package version 0.6, https://cran.r-project.org/web/packages/simPATHy. Accessed 02 Feb. 2025.
Previous versions and publish date:
0.1 (2016-07-18 20:08), 0.2 (2016-09-21 07:27), 0.3 (2019-10-18 23:20), 0.4 (2019-12-18 12:20), 0.5 (2021-06-01 12:40), 0.6 (2021-11-23 10:50)
Other packages that cited simPATHy R package
View simPATHy citation profile
Other R packages that simPATHy depends, imports, suggests or enhances
Functions, R codes and Examples using the simPATHy R package
Some associated functions: SMLEdecomposable . chimera . easyLookDys . easyLookShiny . fitSgraph . generatePath . getPathShiny . graphNELD3-shiny . makePositiveDefinite . plotCorGraph . plotGraphNELD3 . simPATHy . 
Some associated R codes: graphNELD3.R . graphic_function.R . main_function.R . secondary_function.R .  Full simPATHy package functions and examples
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