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shinyTempSignal  

Explore Temporal and Other Phylogenetic Signals
View on CRAN: Click here


Download and install shinyTempSignal package within the R console
Install from CRAN:
install.packages("shinyTempSignal")

Install from Github:
library("remotes")
install_github("cran/shinyTempSignal")

Install by package version:
library("remotes")
install_version("shinyTempSignal", "0.0.8")



Attach the package and use:
library("shinyTempSignal")
Maintained by
Guangchuang Yu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-04-14
Latest Update: 2022-07-06
Description:
Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.
How to cite:
Guangchuang Yu (2022). shinyTempSignal: Explore Temporal and Other Phylogenetic Signals. R package version 0.0.8, https://cran.r-project.org/web/packages/shinyTempSignal
Previous versions and publish date:
0.0.2 (2022-04-14 11:20), 0.0.3 (2022-07-06 08:30), 0.0.4 (2023-11-26 17:50), 0.0.5 (2023-12-12 18:20), 0.0.6 (2024-01-22 09:40), 0.0.7 (2024-02-21 04:40)
Other packages that cited shinyTempSignal R package
View shinyTempSignal citation profile
Other R packages that shinyTempSignal depends, imports, suggests or enhances
Functions, R codes and Examples using the shinyTempSignal R package
Some associated functions: MCC_FluA_H3_tree . dateNumeric . run_shinyTempSignal . 
Some associated R codes: app_config.R . app_server.R . app_ui.R . data.R . dateNumeric.R . function.R . run_shinyTempSignal.R . zzz.R .  Full shinyTempSignal package functions and examples
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