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shelltrace
View on CRAN: Click
here
Download and install shelltrace package within the R console
Install from CRAN:
install.packages("shelltrace")
Install from Github:
library("remotes")
install_github("cran/shelltrace")
Install by package version:
library("remotes")
install_version("shelltrace", "3.5.1")
Attach the package and use:
library("shelltrace")
Maintained by
Niels J. de Winter
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.shelltrace . shelltrace citation info . shelltrace results . shelltrace.pdf . shelltrace_3.5.1.tar.gz . shelltrace_3.5.1.zip . shelltrace_3.5.1.zip . shelltrace_3.5.1.zip . shelltrace_3.5.1.tgz . shelltrace_3.5.1.tgz . shelltrace_3.5.1.tgz . shelltrace_3.5.1.tgz . shelltrace_3.5.1.tgz . shelltrace_3.5.1.tgz . https://CRAN.R-project.org/package=shelltrace .
First Published: 2017-10-06
Latest Update: 2017-10-06
Description:
Contains all the formulae of the growth and trace element uptake model described in the equally-named
Geoscientific Model Development paper (de Winter, 2017, ). The model takes as input a file with X- and Y-coordinates of digitized
growth increments recognized on a longitudinal cross section through the bivalve shell, as well as a BMP file of an elemental map of the
cross section surface with chemically distinct phases separated by phase analysis. It proceeds by a step-by-step process described in
the paper, by which digitized growth increments are used to calculate changes in shell height, shell thickness, shell volume, shell mass
and shell growth rate through the bivalve's life time. Then, results of this growth modelling are combined with the trace element mapping
results to trace the incorporation of trace elements into the bivalve shell. Results of various modelling parameters can be exported in
the form of XLSX files.
How to cite:
Niels J. de Winter (2017). shelltrace: Bivalve Growth and Trace Element Accumulation Model. R package version 3.5.1, https://cran.r-project.org/web/packages/shelltrace. Accessed 31 Mar. 2025.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for shelltrace
Functions, R codes and Examples using
the shelltrace R package
Some associated functions: BMP . IncG . M_el_mat . M_el_mat_c . O1_input . O1_phase . Oyster_Convert_cross_section . Oyster_Export . Oyster_Mass_gain . Oyster_Shell_height . Oyster_Shell_thickness . Oyster_Volumes . Oyster_Z_matrices . Oyster_accumulation . Oyster_combined_run . Oyster_el_time . Oyster_ellipse_parameters . Oyster_growth_run . Oyster_height . Oyster_import_BMP . Oyster_import_TIF . Oyster_import_phases . Oyster_incr_area . Oyster_incr_cross_section . Oyster_length . Oyster_phase_export . Oyster_phase_matrix_BMP . Oyster_phase_matrix_TIF . Oyster_phase_run . Oyster_phase_stats . Oyster_plot_cross_section . Oyster_plot_incr_CS . Oyster_plot_incr_fill . Oyster_run_sec2 . Oyster_run_sec3 . Oyster_run_sec4 . Oyster_run_sec5 . Oyster_run_sec6 . Oyster_subincr_area . Oyster_subincr_av_thickness . Oyster_subincr_av_thickness_X . Oyster_subincr_phases . Oyster_subincr_shell_height . ShellTrace-package . TIF . Z_mat . cross_section . el_time . image_length . incr_matrix0 . incr_matrix1 . incr_matrix2 . incr_matrix3 . lengthfactor . phase_mat . phase_stat . phasemat . pixelsize . pma . subincr_matrix0 . subincr_matrix1 . subincr_matrix2 . subincr_matrix3 . subincr_matrix4 . subincr_matrix5 . subincr_matrix6 .
Some associated R codes: BMP.R . IncG.R . M_el_mat.R . M_el_mat_c.R . O1_input.R . O1_phase.R . Oyster_Convert_cross_section.R . Oyster_Export.R . Oyster_Mass_gain.R . Oyster_Shell_height.R . Oyster_Shell_thickness.R . Oyster_Volumes.R . Oyster_Z_matrices.R . Oyster_accumulation.R . Oyster_combined_run.R . Oyster_el_time.R . Oyster_ellipse_parameters.R . Oyster_growth_run.R . Oyster_height.R . Oyster_import_BMP.R . Oyster_import_TIF.R . Oyster_import_phases.R . Oyster_incr_area.R . Oyster_incr_cross_section.R . Oyster_length.R . Oyster_phase_export.R . Oyster_phase_matrix_BMP.R . Oyster_phase_matrix_TIF.R . Oyster_phase_run.R . Oyster_phase_stats.R . Oyster_plot_cross_section.R . Oyster_plot_incr_CS.R . Oyster_plot_incr_fill.R . Oyster_run_sec2.R . Oyster_run_sec3.R . Oyster_run_sec4.R . Oyster_run_sec5.R . Oyster_run_sec6.R . Oyster_subincr_area.R . Oyster_subincr_av_thickness.R . Oyster_subincr_av_thickness_X.R . Oyster_subincr_phases.R . Oyster_subincr_shell_height.R . ShellTrace-internal.R . TIF.R . Z_mat.R . cross_section.R . el_time.R . image_length.R . incr_matrix0.R . incr_matrix1.R . incr_matrix2.R . incr_matrix3.R . lengthfactor.R . phase_mat.R . phase_stat.R . phasemat.R . pixelsize.R . pma.R . subincr_matrix0.R . subincr_matrix1.R . subincr_matrix2.R . subincr_matrix3.R . subincr_matrix4.R . subincr_matrix5.R . subincr_matrix6.R . Full shelltrace package functions and examples
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