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shapeR
View on CRAN: Click
here
Download and install shapeR package within the R console
Install from CRAN:
install.packages("shapeR")
Install from Github:
library("remotes")
install_github("cran/shapeR")
Install by package version:
library("remotes")
install_version("shapeR", "1.0-1")
Attach the package and use:
library("shapeR")
Maintained by
Lisa Anne Libungan
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-04-03
Latest Update: 2022-11-21
Description:
Studies otolith shape variation among fish populations.
Otoliths are calcified structures found in the inner ear of teleost fish and their shape has
been known to vary among several fish populations and stocks, making them very useful in taxonomy,
species identification and to study geographic variations. The package extends previously described
software used for otolith shape analysis by allowing the user to automatically extract closed
contour outlines from a large number of images, perform smoothing to eliminate pixel noise described in Haines and Crampton (2000) ,
choose from conducting either a Fourier or wavelet see Gen
How to cite:
Lisa Anne Libungan (2015). shapeR: Collection and Analysis of Otolith Shape Data. R package version 1.0-1, https://cran.r-project.org/web/packages/shapeR
Other packages that cited shapeR R package
View shapeR citation profile
Other R packages that shapeR depends,
imports, suggests or enhances
Functions, R codes and Examples using
the shapeR R package
Some associated functions: FISH . cluster.plot . detect.outline . enrich.master.list . estimate.outline.reconstruction . generateShapeCoefficients . getFourier . getMasterlist . getMeasurements . getStdFourier . getStdMeasurements . getStdWavelet . getWavelet . outline.reconstruction.plot . plotFourier . plotFourierShape . plotWavelet . plotWaveletShape . read.master.list . remove.outline . setFilter . shape . shapeR . show . show.original.with.outline . smoothout . stdCoefs . write.image.with.outline .
Some associated R codes: shapeR.R . shapeR_functions.R . Full shapeR package functions and examples
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