Other packages > Find by keyword >

sffdr  

Surrogate Functional False Discovery Rates for Genome-Wide Association Studies
View on CRAN: Click here


Download and install sffdr package within the R console
Install from CRAN:
install.packages("sffdr")

Install from Github:
library("remotes")
install_github("cran/sffdr")

Install by package version:
library("remotes")
install_version("sffdr", "1.0.0")



Attach the package and use:
library("sffdr")
Maintained by
Andrew Bass
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-12-02
Latest Update: 2024-12-02
Description:
Pleiotropy-informed significance analysis of genome-wide association studies (GWAS) with surrogate functional false discovery rates (sfFDR). The sfFDR framework adapts the fFDR to leverage informative data from multiple sets of GWAS summary statistics to increase power in study while accommodating for linkage disequilibrium. sfFDR provides estimates of key FDR quantities in a significance analysis such as the functional local FDR and q-value, and uses these estimates to derive a functional p-value for type I error rate control and a functional local Bayes' factor for post-GWAS analyses (e.g., fine mapping and colocalization). The sfFDR framework is described in Bass and Wallace (2024) <doi:10.1101/2024.09.24.24314276>.
How to cite:
Andrew Bass (2024). sffdr: Surrogate Functional False Discovery Rates for Genome-Wide Association Studies. R package version 1.0.0, https://cran.r-project.org/web/packages/sffdr. Accessed 21 Dec. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited sffdr R package
View sffdr citation profile
Other R packages that sffdr depends, imports, suggests or enhances
Complete documentation for sffdr
Functions, R codes and Examples using the sffdr R package
Full sffdr package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

condGEE  
Parameter Estimation in Conditional GEE for Recurrent Event Gap Times
Solves for the mean parameters, the variance parameter, and their asymptotic variance in a condition ...
Download / Learn more Package Citations See dependency  
helda  
Preprocess Data and Get Better Insights from Machine Learning Models
The main focus is on preprocessing and data visualization of machine learning models performances.So ...
Download / Learn more Package Citations See dependency  
batteryreduction  
An R Package for Data Reduction by Battery Reduction
Battery reduction is a method used in data reduction. It uses Gram-Schmidt orthogonal rotations to f ...
Download / Learn more Package Citations See dependency  
CIFsmry  
Weighted summary of cumulative incidence functions
Estimate of cumulative incidence function in two samples. Provide weighted summary statistics based ...
Download / Learn more Package Citations See dependency  
SEIRfansy  
Extended Susceptible-Exposed-Infected-Recovery Model
Extended Susceptible-Exposed-Infected-Recovery Model for handling high false negative rate and symp ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA