Other packages > Find by keyword >

sffdr  

Surrogate Functional False Discovery Rates for Genome-Wide Association Studies
View on CRAN: Click here


Download and install sffdr package within the R console
Install from CRAN:
install.packages("sffdr")

Install from Github:
library("remotes")
install_github("cran/sffdr")

Install by package version:
library("remotes")
install_version("sffdr", "1.1.2")



Attach the package and use:
library("sffdr")
Maintained by
Andrew Bass
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-12-02
Latest Update: 2024-12-02
Description:
Pleiotropy-informed significance analysis of genome-wide association studies (GWAS) with surrogate functional false discovery rates (sfFDR). The sfFDR framework adapts the fFDR to leverage informative data from multiple sets of GWAS summary statistics to increase power in study while accommodating for linkage disequilibrium. sfFDR provides estimates of key FDR quantities in a significance analysis such as the functional local FDR and q-value, and uses these estimates to derive a functional p-value for type I error rate control and a functional local Bayes' factor for post-GWAS analyses (e.g., fine mapping and colocalization). The sfFDR framework is described in Bass and Wallace (2024) <doi:10.1101/2024.09.24.24314276>.
How to cite:
Andrew Bass (2024). sffdr: Surrogate Functional False Discovery Rates for Genome-Wide Association Studies. R package version 1.1.2, https://cran.r-project.org/web/packages/sffdr. Accessed 24 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:03), 1.0.0 (2024-12-02 13:30), 1.1.0 (2026-02-11 12:40)
Other packages that cited sffdr R package
View sffdr citation profile
Other R packages that sffdr depends, imports, suggests or enhances
Complete documentation for sffdr
Functions, R codes and Examples using the sffdr R package
Full sffdr package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

givitiR  
The GiViTI Calibration Test and Belt
Functions to assess the calibration of logistic regression models with the GiViTI (Gruppo Italiano p ...
Download / Learn more Package Citations See dependency  
FDRsampsize  
Compute Sample Size that Meets Requirements for Average Power and FDR
Defines a collection of functions to compute average power and sample size for studies that use the ...
Download / Learn more Package Citations See dependency  
forecastHybrid  
Convenient Functions for Ensemble Time Series Forecasts
Convenient functions for ensemble forecasts in R combining approaches from the 'forecast' package. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
gemlog  
File Conversion for "Gem Infrasound Logger"
Reads data files from the 'Gem infrasound logger' for analysis and converts to segy format (which is ...
Download / Learn more Package Citations See dependency  
magicfor  
Magic Functions to Obtain Results from for Loops
Magic functions to obtain results from for loops. ...
Download / Learn more Package Citations See dependency  

29,080

R Packages

247,686

Dependencies

77,281

Author Associations

29,081

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA