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serodynamics  

Modeling Longitudinal Antibody Responses to Infection
View on CRAN: Click here


Download and install serodynamics package within the R console
Install from CRAN:
install.packages("serodynamics")

Install from Github:
library("remotes")
install_github("cran/serodynamics")

Install by package version:
library("remotes")
install_version("serodynamics", "0.1.0")



Attach the package and use:
library("serodynamics")
Maintained by
Samuel Schildhauer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-02
Latest Update: 2026-06-02
Description:
Implements Bayesian hierarchical models for estimating antibody kinetic parameters from longitudinal serological data. Fits two-phase within-host models capturing antibody rise, peak, and decay following pathogen infection, using 'JAGS' for posterior inference. Designed as the upstream companion to the 'serocalculator' package for end-to-end seroepidemiological analysis. Methods are described in Teunis and colleagues (2016) <doi:10.1016/j.epidem.2016.04.001> and Teunis and van Eijkeren (2020) <doi:10.1002/sim.8578>.
How to cite:
Samuel Schildhauer (2026). serodynamics: Modeling Longitudinal Antibody Responses to Infection. R package version 0.1.0, https://cran.r-project.org/web/packages/serodynamics. Accessed 22 Jun. 2026.
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