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seriation  

Infrastructure for Ordering Objects Using Seriation
View on CRAN: Click here


Download and install seriation package within the R console
Install from CRAN:
install.packages("seriation")

Install from Github:
library("remotes")
install_github("cran/seriation")

Install by package version:
library("remotes")
install_version("seriation", "1.5.7")



Attach the package and use:
library("seriation")
Maintained by
Michael Hahsler
[Scholar Profile | Author Map]
First Published: 2007-09-01
Latest Update: 2023-12-12
Description:
Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) .
How to cite:
Michael Hahsler (2007). seriation: Infrastructure for Ordering Objects Using Seriation. R package version 1.5.7, https://cran.r-project.org/web/packages/seriation. Accessed 01 May. 2025.
Previous versions and publish date:
0.1-1 (2007-09-01 12:15), 0.1-3 (2008-02-05 10:34), 0.1-4 (2008-04-04 15:05), 0.1-5 (2008-08-22 13:46), 0.1-6 (2008-09-29 20:52), 1.0-0 (2009-03-24 20:34), 1.0-1 (2009-08-25 10:27), 1.0-2 (2010-03-13 16:02), 1.0-3 (2011-01-14 13:19), 1.0-4 (2011-06-28 12:24), 1.0-5 (2011-09-02 07:10), 1.0-6 (2011-10-19 09:34), 1.0-7 (2012-09-25 16:26), 1.0-8 (2012-11-06 08:37), 1.0-9 (2012-11-19 15:07), 1.0-10 (2013-02-15 11:48), 1.0-11 (2013-09-06 20:45), 1.0-12 (2014-02-19 14:57), 1.0-13 (2014-03-11 16:05), 1.0-14 (2014-12-03 17:23), 1.1-0 (2015-06-10 01:04), 1.1-1 (2015-07-01 01:04), 1.1-2 (2015-08-23 23:47), 1.1-3 (2015-12-19 09:35), 1.2-0 (2016-02-22 14:33), 1.2-1 (2016-08-07 16:00), 1.2-2 (2017-05-09 08:56), 1.2-3 (2018-02-06 00:27), 1.2-5 (2019-05-30 19:00), 1.2-6 (2019-06-05 00:00), 1.2-7 (2019-06-08 16:40), 1.2-8 (2019-08-27 19:50), 1.2-9 (2020-10-01 10:10), 1.3.0 (2021-06-30 19:10), 1.3.1 (2021-10-16 06:50), 1.3.2 (2022-02-10 19:20), 1.3.3 (2022-03-07 09:00), 1.3.4 (2022-03-17 16:30), 1.3.5 (2022-03-28 18:40), 1.3.6 (2022-07-16 09:30), 1.4.0 (2022-10-21 20:40), 1.4.1 (2023-01-07 16:30), 1.4.2 (2023-03-08 09:30), 1.5.0 (2023-07-20 00:10), 1.5.1 (2023-07-20 23:20), 1.5.2 (2023-11-27 00:30), 1.5.3 (2023-11-29 09:40), 1.5.4 (2023-12-12 12:00), 1.5.5 (2024-04-18 00:10), 1.5.6 (2024-08-19 18:50)
Other packages that cited seriation R package
View seriation citation profile
Other R packages that seriation depends, imports, suggests or enhances
Complete documentation for seriation
Functions, R codes and Examples using the seriation R package
Some associated functions: Chameleon . Irish . LS . Munsingen . Psych24 . SupremeCourt . Townships . VAT . Wood . Zoo . bertinplot . create_lines_data . criterion . dissplot . get_order . hmap . is.robinson . lle . palette . permutation_vector2matrix . permute . pimage . register_DendSer . register_GA . register_optics . register_smacof . register_tsne . register_umap . registry_for_criterion_methods . registry_for_seriaiton_methods . reorder.hclust . ser_dist . ser_permutation . ser_permutation_vector . seriate . seriate_best . seriation-package . uniscale . 
Some associated R codes: AAA_check_installed.R . AAA_color_palette.R . AAA_defaults.R . AAA_map.R . AAA_parameters.R . AAA_registry_criterion.R . AAA_registry_seriate.R . AAA_seriation-package.R . Chameleon.R . Irish.R . Munsingen.R . Psych24.R . SupremeCourt.R . Townships.R . VAT.R . Wood.R . Zoo.R . bea.R . bertinplot.R . criterion.R . criterion.array.R . criterion.dist.R . criterion.matrix.R . dissplot.R . get_order.R . ggVAT.R . ggbertinplot.R . ggdissplot.R . gghmap.R . ggpimage.R . grid_helpers.R . hmap.R . lines_and_ordered_data.R . lle.R . permute.R . pimage.R . register_DendSer.R . register_GA.R . register_optics.R . register_smacof.R . register_tsne.R . register_umap.R . reorder.hclust.R . robinson.R . ser_dist.R . ser_permutation.R . ser_permutation_vector.R . ser_permutation_vector2matrix.R . seriate.R . seriate.array.R . seriate.data.frame.R . seriate.dist.R . seriate.matrix.R . seriate.table.R . seriate_AOE.R . seriate_ARSA_Branch-Bound.R . seriate_BEA.R . seriate_CA.R . seriate_GSA.R . seriate_HC.R . seriate_LLE.R . seriate_MDS.R . seriate_Mean.R . seriate_PCA.R . seriate_QAP.R . seriate_R2E.R . seriate_SGD.R . seriate_SPIN.R . seriate_TSP.R . seriate_VAT.R . seriate_best.R . seriate_enumerate.R . seriate_heatmap.R . seriate_identity.R . seriate_random.R . seriate_reverse.R . seriate_spectral.R . seriate_vegan.R . uniscale.R .  Full seriation package functions and examples
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