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sequoia  

Pedigree Inference from SNPs
View on CRAN: Click here


Download and install sequoia package within the R console
Install from CRAN:
install.packages("sequoia")

Install from Github:
library("remotes")
install_github("cran/sequoia")

Install by package version:
library("remotes")
install_version("sequoia", "2.11.2")



Attach the package and use:
library("sequoia")
Maintained by
Jisca Huisman
[Scholar Profile | Author Map]
First Published: 2017-02-13
Latest Update: 2024-03-01
Description:
Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) () for more information.
How to cite:
Jisca Huisman (2017). sequoia: Pedigree Inference from SNPs. R package version 2.11.2, https://cran.r-project.org/web/packages/sequoia. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.7.2 (2017-02-13 12:57), 0.8.1 (2017-03-10 08:12), 0.9.2 (2017-07-18 00:05), 0.9.3 (2017-07-25 22:32), 1.0.0 (2018-03-29 16:36), 1.0.2 (2018-04-01 22:37), 1.1.1 (2018-08-13 17:20), 1.3.1 (2019-06-14 14:40), 1.3.3 (2019-06-20 16:50), 2.0.7 (2020-05-18 20:30), 2.3.2 (2021-04-29 17:50), 2.3.3 (2021-05-03 02:20), 2.3.4 (2021-05-15 09:10), 2.3.5 (2021-05-22 17:10), 2.4.1 (2023-01-08 16:00), 2.5.3 (2023-03-21 10:10), 2.5.6 (2023-04-22 16:00), 2.7.2 (2023-09-06 11:20), 2.8.3 (2023-12-19 16:40), 2.9.0 (2024-03-01 12:10), 2.11.1 (2024-05-27 22:10)
Other packages that cited sequoia R package
View sequoia citation profile
Other R packages that sequoia depends, imports, suggests or enhances
Complete documentation for sequoia
Functions, R codes and Examples using the sequoia R package
Some associated functions: CalcBYprobs . CalcCorners . CalcLL . CalcMaxMismatch . CalcOHLLR . CalcPairLL . CalcRped . CheckAP . CheckGeno . CheckLH . CheckParams . ComparePairs . Conf_griffin . CountAgeDif . DoErrors . DuplicateCheck . DyadCompare . ErrPerSNP . ErrToM . EstConf . EstEr . FieldMums_griffin . FindFamilies . FoldSibGPs . FortifyPairs . GenoConvert . Geno_HSg5 . Geno_griffin . GetAncestors . GetDescendants . GetDummifiable . GetLLRAge . GetMaybeRel . GetRelA . GetRelM . Inherit_patterns . LHConvert . LH_HSg5 . LH_griffin . LLRplot . MakeAgePrior . MaybeRel_griffin . MergeFill . MkAPdefault . MkFortParams . MkGenoErrors . NumToID . OHperSNP . ParamToSpecs . PedCompare . PedPolish . PedStripFID . PedToNum . Ped_HSg5 . Ped_griffin . PlotAgePrior . PlotPairLL . PlotPedComp . PlotRelPairs . PlotSeqSum . PlotSnpStats . SeqOUT_HSg5 . SeqOUT_griffin . SeqParSib . SibMatch . SimGeno . SimGeno_example . SmoothAP . SnpStats . SpecsToParam . SummarySeq . Vcomp . VennSquares . getAssignCat . getGenerations . mtSame2Dif . orderLH . rc . sequoia . tryCatch.W.E . writeColumns . writeSeq . 
Some associated R codes: CalcBYprobs.R . CalcMaxMismatch.R . CalcOHLLR.R . CalcPairLL.R . CalcRped.R . CheckGeno.R . CheckLifeHist.R . ComparePairs.R . ComparePeds.R . ConfProb.R . CountGenerations.R . Data_documentation.R . DuplicateCheck.R . ErrToM.R . EstEr.R . FindFamilies.R . GenoConvert.R . GetMaybeRel.R . MkAgePrior.R . PedPolish.R . PedToNum.R . PlotAgePrior.R . PlotPairLL.R . PlotPedComp.R . Prepare.R . RelPlot.R . SNPstats.R . SeqListSummary.R . Sequoia_F90wrappers.R . Sequoia_Main.R . SimGeno.R . Utils.R . WriteToFiles.R . getAssignable.R . getRelM.R . zzz.R .  Full sequoia package functions and examples
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