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sequenza
View on CRAN: Click
here
Download and install sequenza package within the R console
Install from CRAN:
install.packages("sequenza")
Install from Github:
library("remotes")
install_github("cran/sequenza")
Install by package version:
library("remotes")
install_version("sequenza", "3.0.0")
Attach the package and use:
library("sequenza")
Maintained by
Francesco Favero
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-12-02
Latest Update: 2023-04-01
Description:
Tools to analyze genomic sequencing data from
paired normal-tumor samples, including cellularity and ploidy estimation; mutation
and copy number (allele-specific and total copy number) detection, quantification
and visualization.
How to cite:
Francesco Favero (2013). sequenza: Copy Number Estimation from Tumor Genome Sequencing Data. R package version 3.0.0, https://cran.r-project.org/web/packages/sequenza. Accessed 30 Jan. 2025.
Previous versions and publish date:
Other packages that cited sequenza R package
View sequenza citation profile
Other R packages that sequenza depends,
imports, suggests or enhances
Functions, R codes and Examples using
the sequenza R package
Some associated functions: CP.data . baf.model.fit . bayes . breaks . chromosome.view . cp.plot . example.seqz . gc . model_points . mutations . plotWindows . read_seqz . theoretical . type_matrix . windowValues . workflow .
Some associated R codes: bayes.R . extract.R . fit.R . gcstats.R . graphics.R . misc.R . model.R . mutations.R . read.R . results.R . segments.R . solutions.R . windows.R . Full sequenza package functions and examples
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