Other packages > Find by keyword >

sequenza  

Copy Number Estimation from Tumor Genome Sequencing Data
View on CRAN: Click here


Download and install sequenza package within the R console
Install from CRAN:
install.packages("sequenza")

Install from Github:
library("remotes")
install_github("cran/sequenza")

Install by package version:
library("remotes")
install_version("sequenza", "3.0.0")



Attach the package and use:
library("sequenza")
Maintained by
Francesco Favero
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-12-02
Latest Update:
Description:
Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.
How to cite:
Francesco Favero (2013). sequenza: Copy Number Estimation from Tumor Genome Sequencing Data. R package version 3.0.0, https://cran.r-project.org/web/packages/sequenza. Accessed 30 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:03), 1.0.1 (2013-12-02 21:34), 1.0.2 (2013-12-05 00:39), 1.0.3 (2013-12-12 12:53), 1.0.4 (2014-01-20 07:20), 1.0.5 (2014-02-11 15:24), 2.0.0 (2014-04-08 07:02), 2.1.0 (2014-10-08 17:22), 2.1.1 (2015-01-27 16:55), 2.1.2 (2015-10-10 01:22), 3.0.0 (2019-05-09 15:50)
Other packages that cited sequenza R package
View sequenza citation profile
Other R packages that sequenza depends, imports, suggests or enhances
Functions, R codes and Examples using the sequenza R package
Some associated functions: CP.data . baf.model.fit . bayes . breaks . chromosome.view . cp.plot . example.seqz . gc . model_points . mutations . plotWindows . read_seqz . theoretical . type_matrix . windowValues . workflow . 
Some associated R codes: bayes.R . extract.R . fit.R . gcstats.R . graphics.R . misc.R . model.R . mutations.R . read.R . results.R . segments.R . solutions.R . windows.R .  Full sequenza package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

CVrisk  
Compute Risk Scores for Cardiovascular Diseases
Calculate various cardiovascular disease risk scores from the Framingham Heart Study (FHS), the Ame ...
Download / Learn more Package Citations See dependency  
RiemBase  
Functions and C++ Header Files for Computation on Manifolds
We provide a number of algorithms to estimate fundamental statistics including Fr ...
Download / Learn more Package Citations See dependency  
GLMsData  
Generalized Linear Model Data Sets
Data sets from the book Generalized Linear Models with Examples in R by Dunn and Smyth. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA